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葡萄钾离子通道基因VviSKOR的克隆、表达及电生理功能

本站小编 Free考研考试/2021-12-26

沈静沅,1, 唐美玲,2, 杨庆山1,3, 高雅超1, 刘万好1,2, 程杰山1, 张洪霞1, 宋志忠,1,41鲁东大学农学院/山东省高等学校重点实验室“作物高产抗逆分子模块育种实验室”,中国山东烟台 264000
2烟台市农业科学院葡萄研究所,中国山东烟台 264000
3山东省林业科学研究院,中国济南 250014
4剑桥大学植物系,英国剑桥 CB2 3EA

Cloning, Expression and Electrophysiological Function Analysis of Potassium Channel Gene VviSKOR in Grape

SHEN JingYuan,1, TANG MeiLing,2, YANG QingShan1,3, GAO YaChao1, LIU WanHao1,2, CHENG JieShan1, ZHANG HongXia1, SONG ZhiZhong,1,41College of Agriculture, Ludong University/Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong, Yantai 264025, Shandong, China
2Institute of Grape, Yantai Academy of Agricultural Science, Yantai 264000, Shandong, China
3Shandong Academy of Forestry, Jinan 250014, China
4Department of Plant Science, University of Cambridge, Cambridge UK CB2 3EA

通讯作者: 宋志忠,Tel:0535-6664662;E-mail: szhzh2000@163.com

沈静沅与唐美玲为同等贡献作者。
责任编辑: 赵伶俐
收稿日期:2019-12-30接受日期:2020-02-23网络出版日期:2020-08-01
基金资助:国家重点研发计划.2019YFD1000500
山东省农业良种工程基金.2019LZGC009-2
山东省重点研发计划.2018JH2006
国家现代农业产业技术体系专项资金.CARS-29-16


Received:2019-12-30Accepted:2020-02-23Online:2020-08-01
作者简介 About authors
沈静沅,Tel:0535-6664662;E-mail: 1391570440@qq.com

唐美玲,Tel:0535-6352051;E-mail: tmling1999@163.com









摘要
【目的】从葡萄中克隆并鉴定钾离子通道基因VviSKOR,在转录水平分析其组织特异性表达特征及对缺钾、氯化钠(NaCl)与脱落酸(ABA)等胁迫的响应情况,通过膜片钳电生理技术研究其生理学功能。【方法】通过同源克隆法,在葡萄基因组中筛选并鉴定钾离子通道基因VviSKOR;借助多种生物信息学软件分析葡萄SKOR及其编码蛋白的特征;利用MEGA 7.0软件建立葡萄、拟南芥、水稻、玉米、高粱、短柄草、大豆、番茄、黄瓜、白杨、桃、梨、草莓、苹果、木瓜、柑橘、香蕉、凤梨等18种不同科属植物SKOR同源蛋白成员的系统进化树;利用实时荧光定量PCR分析VviSKOR在葡萄不同组织部位的表达模式及对缺钾、NaCl、ABA与sorbitol等胁迫的响应情况;利用膜片钳电生理系统分析葡萄VviSKOR的生理学功能。【结果】在葡萄基因组中克隆获得一个钾离子通道基因VviSKOR,其编码蛋白含有环核苷酸结合域、离子通道跨膜域、Ankyrin repeats和KHA功能结构域,属于典型的Shaker类钾离子通道;18种不同科属植物SKOR蛋白在氨基酸水平具有58.92%的一致性,系统进化树表明葡萄VviSKOR与黄瓜CsaSKOR紧密聚在一起,其遗传进化关系上较近,4种禾本科植物(玉米、水稻、短柄草和高粱)SKOR家族成员在系统进化树上更倾向于聚在一起,而同属蔷薇科植物(草莓、苹果、梨和桃)SKOR在进化关系上紧密聚在一起;亚细胞定位预测表明葡萄VviSKOR蛋白主要定位于细胞质膜,且含有6个跨膜区,其等电点PI为6.24,表明该蛋白含有偏酸性氨基酸残基较多;在VviSKOR启动子区域预测到12种顺式作用元件,主要包括胁迫响应、激素响应和细胞周期调控等不同生命活动相关的调控元件;数据库表达谱分析结果表明葡萄VviSKOR在多种组织或器官中均有表达,在葡萄树根中的表达水平最高,其次是叶和木质部;实时荧光定量PCR分析表明VviSKOR在7年生‘马瑟兰'葡萄树根部和幼苗根部的表达水平均最高;幼苗中,VviSKOR在转录水平对高钾处理没有响应,但对缺钾、ABA和NaCl胁迫处理较为敏感,其在检测幼苗根部、茎部和叶片中的表达量均被缺钾和ABA抑制而降低,却受NaCl胁迫诱导而显著增强;转染pTracer-CMV3-SKOR质粒的HEK293-T细胞记录到外向电流,且随细胞外钾离子浓度的增加而降低,表明VviSKOR为一外流型钾离子通道,此外,记录到的电流随着电压的增加而增加,说明VviSKOR也是电压依赖型钾离子通道。【结论】葡萄VviSKOR与黄瓜CsaSKOR在遗传进化关系上最为相近;VviSKOR主要在葡萄根部(成年树和幼苗)表达,幼苗中VviSKOR在转录水平受缺钾、ABA和NaCl胁迫的调控;VviSKOR是葡萄根部主导钾离子外排的钾离子通道。
关键词: 葡萄;Shaker类钾离子通道;SKOR;基因克隆与表达;膜片钳技术

Abstract
【Objective】The aim of this study was to isolate and characterize potassium (K+) channel gene SKOR (stelar K+ outward rectifier) from grape genome, based on the analysis of the tissue-specific expression patterns of VviSKOR gene and response to K+ depletion, K+ excess, NaCl and ABA treatments, as well as function study by patch clamping electrophysiological technology.【Method】By carrying out homology-based cloning, a putative K+ channel gene VviSKOR was screened and isolated from grape genome. The details of VviSKOR gene were analyzed, and the protein encoded via utilizing bioinformatical analysis software. With the help of MEGA7.0 software, a phylogenetic tree was constructed by multiple alignments of SKOR proteins from grape, Arabidopsis, rice, maize, sorghum, slender false brome, soybean, tomato, cucumber, poplar, peach, pear, strawberry, apple, papaya, citrus, banana and pineapple. Using quantitative real-time PCR (qRT-PCR), the expression profiles of VviSKOR gene and its response to K+ depletion, NaCl and ABA treatments were analyzed. Preliminary analized the physiological function of VviSKOR gene by using patch clamping.【Result】VviSKOR was isolated and determined from grape genome. VviSKOR contained the functional domains of cyclic nucleotide-binding domain, ion channel transmembrane, ankyrin repeats and KHA domain, which belonged to the classic plant potassium channels. The amino acid sequences of SKOR protein from 18 plants shared an overall identity of 58.92%. Phylogenetic tree analysis showed that VviSKOR was closely clustered with homolog of CsaSKOR from cucumber. SKOR members from 4 grass family plants (maize, rice, slender false brome and sorghum) were prone to be clustered together, while SKOR members from Rosaceae, including strawberry, apple, pear and peach, were prone to be clustered together. VviSKOR was mainly localized in plasma membrane, which contained 6 transmembrane domains (TMs), and the theoretical isoelectric point (PI) was 6.24. Twelve kinds of cis-acting regulatory elements, including stress response, hormone response and cell cycle regulation, were found in the promoter region of VviSKOR gene. Database expression profile analysis showed that VviSKOR gene was expressed in different tissues or organs in grape, and the highest percentage was predicted in roots, followed by leaves and xylem. qRT-PCR analysis showed that VviSKOR gene was mainly expressed in roots of both 7-year-old ‘Marselan' and young seedlings. Moreover, VviSKOR gene was more sensitive to K+ depletion, ABA and NaCl treatments, whose expression were decreased under K+ depletion and ABA treatments, but induced under NaCl treatment in all tested tissues, including roots, and roots. Expression of VviSKOR gene had no response to NaCl treatment. Preliminary evidence of patch clamp analysis revealed that outward current was recorded in HEK293-T cells transfected with pTracer-CMV3-SKOR plasmid, and the amount of released K+ was reduced with elevated external-K+, indicating that VviSKOR was an outwardly rectifying K+ channel. In addition, the recorded current increased with the enhancement of voltage, indicating that VviSKOR was also a voltage dependent K+ channel.【Conclusion】VviSKOR gene was mainly expressed in grape roots (mature trees and seedlings). VviSKOR was closely clustered with homolog of CsaSKOR from cucumber in phylogenetic tree. Expression of VviSKOR gene was prone to be regulated by K+ depletion, ABA, and NaCl treatment. VviSKOR was an outwardly rectifying K+ channel that dominated the K+ release in grape roots.
Keywords:grape;Shaker type potassium channel;SKOR;gene cloning and expression;patch clamping


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本文引用格式
沈静沅, 唐美玲, 杨庆山, 高雅超, 刘万好, 程杰山, 张洪霞, 宋志忠. 葡萄钾离子通道基因VviSKOR的克隆、表达及电生理功能[J]. 中国农业科学, 2020, 53(15): 3158-3168 doi:10.3864/j.issn.0578-1752.2020.15.015
SHEN JingYuan, TANG MeiLing, YANG QingShan, GAO YaChao, LIU WanHao, CHENG JieShan, ZHANG HongXia, SONG ZhiZhong. Cloning, Expression and Electrophysiological Function Analysis of Potassium Channel Gene VviSKOR in Grape[J]. Scientia Acricultura Sinica, 2020, 53(15): 3158-3168 doi:10.3864/j.issn.0578-1752.2020.15.015


0 引言

【研究意义】钾离子(K+)是作物生长发育所必需的关键矿质营养元素[1,2,3]。植物为了满足正常生长,需要通过根部从土壤中有效地吸收所需的钾素,然后分配到不同器官部位,或者在某些组织富集积累[4,5,6,7]SKOR编码一类外向整流型Shaker类钾离子通道,负责将韧皮部的K+分泌至木质部,介导K+向根系输导组织的释放,属于典型的电压依赖型钾外排过程,在植物生长发育过程中起重要作用[4,8]。近20年来,模式作物拟南芥中SKOR通道生理功能的分子机制研究较为详尽。然而,果树中Shaker类钾离子通道的功能依然未知,有关SKOR蛋白的研究仍然空白。【前人研究进展】钾离子是植物细胞中最为重要的金属元素之一,参与信号传导、气孔运动、光合作用、蒸腾作用和胁迫抗逆等生命过程,是作物生长发育所必需的关键营养元素,缺钾不仅会导致作物产量下降,同时也会影响作物品质[1-2,7-8]。植物钾吸收动力学研究表明植物钾营养吸收存在2种机制:机制Ⅰ,即主动吸钾过程,指外界钾浓度小于0.2 mmol?L-1时起主要作用的高亲和性钾吸收系统;机制Ⅱ,即被动吸钾过程,指外界钾浓度大于1 mmol?L-1时起主要作用的低亲和性钾吸收系统[9,10]。植物体内钾离子的动态平衡及分配主要由定位于细胞质膜的各类钾离子通道来介导完成,其中,Shaker类钾通道研究最为透彻,在植物钾素营养高效中起至关重要的作用。Shaker类钾通道对底物K+的亲和常数约在数十mmol?L-1,属于典型的低亲和、高通量的钾离子通道。1992年,ANDERSON等[11]和SENTENAC等[12]分别在模式植物拟南芥中报道了第一个植物Shaker类型钾离子通道KAT1和AKT1,此后20年内,国内外****陆续从不同植物中发现了30多个的钾离子通道[13,14,15]。另外,拟南芥AthSKOR[4]和AthGORK[16]是两类外向整流型钾离子通道,其中,AthGORK主要在叶片保卫细胞中表达,该通道功能缺失后导致气孔关闭受抑制,AthGORK也可以被蛋白激酶CPK33调节[15,16,17];AthSKOR主要定位于拟南芥根的中柱鞘和中柱薄壁细胞,负责将韧皮部的钾离子分泌至木质部,进而实现钾离子经由木质部的根-茎长距离运输,介导典型的电压依赖型钾外排过程,该通道功能缺失后导致地上部含钾量降低约50%[4]。此后,在水稻[18]、小花碱茅[19]、霸王[20]、甜瓜[14]、黑果枸杞[21]等多种植物中陆续报道了SKOR型钾离子通道,发现这些钾通道具有相似的蛋白结构特征,并包含一段极保守的标签序列GYGD。【本研究切入点】果树中,有关Shaker类钾离子通道的研究未见报道,SKOR的生物学功能有待研究。【拟解决的关键问题】本研究以‘马瑟兰’葡萄为材料,克隆VviSKOR,明确其表达模式与电生理功能,为研究果树钾素营养高效机制提供理论基础和基因材料。

1 材料与方法

1.1 试验时间、地点

试验于2017年1月至2019年11月在鲁东大学农林作物遗传改良中心、国家现代葡萄产业技术体系烟台综合试验站和剑桥大学植物系离子运输研究室进行。

1.2 试验设计与方法

1.2.1 试验材料与胁迫处理 供试材料为国家现代葡萄产业技术体系烟台综合试验站的7年生‘马瑟兰’葡萄树,树形采用单干单臂,直立叶幕,露天篱架栽培,株行距为1 m×2 m,树体健壮,常规田间管理。样品采集参照王壮伟等[22]方法,分别于2019年不同日期采集7年生‘马瑟兰’的显露期花序(4月21号)、新生叶片(5月10号)、韧皮部(5月18号)、盛开期的花(5月18号,花序中部)、新生根(5月28号)、幼果(5月28号)和熟果(9月29号)等组织材料,液氮充分冷冻后保存于超低温冰箱。非生物胁迫处理所用材料为国家现代葡萄产业技术体系烟台综合试验站提供的‘马瑟兰’组培幼苗,根据王壮伟等[22]方法,在人工气候箱中利用MS营养液预培养3 d,然后分别进行缺钾(MS配方中的KNO3和KH2PO4分别被NaNO3和NaH2PO3代替)、高钾(40 mmol·L-1 KCl)、脱落酸(200 μmol·L-1 ABA)和盐胁迫(160 mmol·L-1 NaCl)等处理,每个处理进行3组生物学重复,每组处理9株幼苗,处理48 h后,分别采集幼苗根、茎和叶片等材料,液氮冷冻后备用。

1.2.2 葡萄VviSKOR克隆 以拟南芥AthSKOR(AT3G02850)氨基酸序列为参考,在Phytozome葡萄基因组(http://www.phytozome.net)中检索得到一个SKOR同源蛋白,在Pfam在线服务器(http://pfam.xfam.org/search)预测功能结构域。根据Phytozome获得的葡萄VviSKOR的CDS序列,分别设计上下游引物(表1),利用Prime STARTM HS DNA聚合酶(TaKaRa,大连)进行PCR扩增,送往生工生物工程(上海)股份有限公司测序验证。

Table 1
表1
表1本研究所用特异性引物
Table 1Specific primers used in this work
目的
Intention
引物
Primer (5′-3′)
扩增产物大小
Amplicon size (bp)
VviSKOR CDS扩增
Amplication of VviSKOR CDS
F: ATGATGAATGATTGGTTCTCTG
R: CTAAATATCTAGTGTTTCACAT
2385
SKOR特异性表达引物
Specific expression primers of SKOR
F: GTGGTTTTCTGTGTGCGACC
R: GCCACATGAAGTGGGGTTCT
118
Ubiquitin特异性表达引物
Specific expression primers of Ubiquitin
F: CCTCATCTTCGCTGGCAAAC
R: GGTGTAGGTCTTCTTCTTGCG
133
pTracer-CMV3-SKOR质粒构建
Construction of plasmid of pTracer-CMV3-SKOR vector
F: GAGAGAATTCCATGATGAATGATTGGTTC
R: GAGAGCGGCCGCCTAAATATCTAGTGTTTC
2385

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1.2.3 葡萄VviSKOR生物信息学分析 在Phytozome葡萄基因组数据库中下载VviSKOR的CDS序列、基因组DNA序列、启动子区域序列和编码氨基酸序列。根据王壮伟等[22]的方法,分别利用Gene Structure Display、PSORT和Plant CARE在线服务器预测VviSKOR的基因结构、亚细胞定位和cis-顺式作用元件;运用TMpredict和ProtParam在线软件分析VviSKOR蛋白的跨膜结构域、理论等电点、稳定性、亲水性等理化特征;利用ClustalX 2.0软件对葡萄、拟南芥、水稻、玉米、高粱、短柄草、大豆、番茄、黄瓜、白杨、桃、梨、草莓、苹果、木瓜、柑橘、香蕉、凤梨等18种不同科属植物的SKOR同源蛋白进行氨基酸序列一致性分析,借助MEGA 7.0软件对上述18种植物的SKOR同源蛋白构建系统进化树;利用Phytozome葡萄基因组数据库表达谱信息分析VviSKOR的表达模式。

1.2.4 实时荧光定量PCR分析 利用RNA提取试剂盒MiniBEST Plant RNA Extraction Kit(TaKaRa,大连)分别提取组培幼苗和7年生葡萄树不同组织材料的总RNA;借助反转录试剂盒PrimeScriptTM RT reagent Kit(TaKaRa,大连)合成第一链cDNA;通过NCBI/Primer-BLAST在线服务器设计VviSKOR的特异性表达引物(表1),以葡萄Ubiquitin(GenBank No. MH114011)作为内参基因,荧光染料使用SYBR Green(TaKaRa,大连),参照王壮伟等[22]的方法在ABI 7500荧光定量PCR仪分析VviSKOR的表达特征,在ABI 7500 PCR仪获得相应反应的Ct值,经Ubiquitin内参基因均一化后,利用2-ΔΔCt法计算相对表达量[23]。每个样品设置3个生物学重复,每个生物学重复进行3次技术重复。

1.2.5 pTracer-CMV3-SKOR表达载体构建 设计构建表达载体pTracer-CMV3-SKOR的特异引物对,上游引物添加酶切位点EcoR I,下游引物添加酶切位点Not I(表1,下划线已标注),由生工生物工程(上海)股份有限公司合成,扩增产物通过限制性内切酶EcoR I/Not I(New England Biolabs,美国)双酶切作用后,利用T4 DNA连接酶(New England Biolabs,美国)构建到同样双酶切的pTracer-CMV3载体多克隆位点,获得重组表达载体pTracer-CMV3-SKOR,转化大肠杆菌感受态DH5α,挑选阳性克隆,经EcoR I/Not I双酶切验证后,再次送往生工生物工程(上海)股份有限公司测序验证。

1.2.6 膜片钳电生理研究 按照SU等[24]的方法,通过膜片钳电生理系统进行SKOR的功能研究:纯化浓缩后的pTracer-CMV3-SKOR质粒转染到HEK293-T细胞(ATCC公司,美国),同时转染pTracer-CMV3空载体作为对照试验,挑取带绿色荧光的细胞,利用pCLAMP 10.0(Axon,美国)采集通道基因的电流信号,借助pCLAMP 10.0和SigmaPlot 10.0软件进行图像采集及数据分析。每种KCl浓度下选择5个细胞进行重复性研究。

1.2.7 数据显著性分析 利用SPSS 13.0软件(SPSS Chicago,美国)开展数据的显著性分析,在胁迫处理与对照条件两个独立样品间进行t-检验(检验水平0.01<*P<0.05;**P<0.01)。

2 结果

2.1 葡萄VviSKOR的克隆

以拟南芥AthSKOR氨基酸序列为参考序列,在Phytozome葡萄基因组数据库中检索得到1个同源基因,命名为VviSKOR(Gene ID:GSVIVT01030667001),在Pfam在线服务器预测到环核苷酸结合域(PF00027)、离子通道跨膜域(PF00520)、Ankyrin重复序列(PF12796)和KHA(PF11834)等功能结构域(图1-A),并检测到极保守的标签序列GYGD,表明葡萄VviSKOR属于典型的外排型钾离子通道。扩增片段经测序验证,获得‘马瑟兰’葡萄的VviSKOR的CDS序列,共2 385 bp,编码794个氨基酸。

图1

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图1VvSKOR结构域预测及VviSKOR结构

A:结构域预测;B:基因结构分析
Fig. 1Domain of VvSKOR and gene structure of VviSKOR gene

A: Domain prediction; B: Gene structure analysis


2.2 VviSKOR定位、编码蛋白特征

由数据库信息可知,VviSKOR定位于第14号染色体上,含有12个长度不一的内含子(图1-B);VviSKOR蛋白含有6个跨膜区,等电点PI为6.24,表明其含有的酸性氨基酸较多;VviSKOR蛋白的不稳定指数为39.85,属于稳定蛋白;VviSKOR的GRAVY值为-0.108,表明其为亲水性蛋白质。

2.3 18种不同植物SKOR同源蛋白的系统进化树

不同科属植物SKOR同源蛋白之间具有较高的同源性,两两物种之间同源蛋白的氨基酸序列一致性均高于78%,18种植物SKOR同源成员在氨基酸水平依然具有58.92%的一致性(表2),尤其在第250位至700位的氨基酸序列一致性最为显著(图2),在核苷酸水平具有62.03%的一致性(数据未展示)。

Table 2
表2
表219种已测序植物SKOR蛋白信息
Table 2Information of nineteen SKOR proteins from sequenced plant
物种
Species
蛋白
Protein
GenBank登录号
GenBank No.
编码区
CDS (bp)
氨基酸数目
Amino acid No.
葡萄Vitis vinifera VviSKORGSVIVT010306670012385794
拟南芥Arabidopsis thalianaAthSKORAT3G028502487828
水稻Oryza sativaOsaSKORLOC_Os06g140302577858
玉米Zea maysZmaSKORGRMZM2G310569_T012640879
高粱Sorghum bicolorSbiSKORSobic.010G1028002565854
短柄草Brachypodium distachyonBdiSKORBradi1g443172502833
大豆Glycine maxGmaSKORGlyma.02G2434002550849
番茄Solanum lycopersicumSlySKORSolyc11g0115002490829
黄瓜Cucumis sativusCsaSKORCucsa.0346702487828
白杨Populus trichocarpaPtrSKORPotri.017G1354002526841
Prunus persicaPpeSKORPrupe.3G1649002493830
Pyrus bretschneideriPbrSKORPbr0228272521839
草莓Fragaria vescaFveSKORmrna30492.1-v1.0-hybrid37951264
苹果Malus domesticaMdoSKORMDP00002632952523840
木瓜Carica papayaCpaSKORevm.model.supercontig_116.822376791
柑橘Citrus sinensisCsiSKORorange1.1g003425m2466821
香蕉Musa acuminataMacSKORGSMUA_Achr9T15840_0012538845
凤梨Ananas comosusAcoSKORAco0029532457818

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图2

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图218种植物SKOR高保守氨基酸序列区域一致性分析

Fig. 2Identity analysis of highly conservative regions of SKOR proteins from 18 plants



系统进化树建构结果表明,18种不同科属植物SKOR同源蛋白在遗传进化关系上有较大差异:其中,葡萄和黄瓜同为双子叶植物,葡萄VviSKOR和黄瓜CsaSKOR在系统进化关系上紧密聚在一起,在遗传距离上可能是相近的(图3);水稻、玉米、高粱和短柄草同为禾本科植物,其SKOR同源蛋白在进化关系上更倾向于聚在一起,苹果、梨、桃和草莓同属蔷薇科植物,其SKOR同源蛋白更倾向于聚在一起,在遗传距离上更为相近,而蔷薇科的木瓜却与拟南芥、番茄和柑橘等不同属的双子叶植物在遗传距离上相近,其SKOR同源蛋白在系统进化树上紧密聚在一起(图3)。

图3

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图318种植物SKOR蛋白的系统进化树

Fig. 3The phylogenetic tree of SKOR proteins from 18 plants



2.4 VviSKOR亚细胞定位及启动子顺式作用元件预测

图4所示,亚细胞定位预测表明VviSKOR主要定位于细胞膜(约占33%)和线粒体内膜(29%),其次是高尔基体(22%)和内质网膜(22%)。

图4

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图4VviSKOR亚细胞定位预测

Fig. 4Subcellular localization prediction of VviSKOR



cis-顺式作用元件预测结果表明,VviSKOR启动子区域鉴定到至少12种顺式作用元件(表3),包括启动子和增强子区域、胁迫响应(低温感应、光感应、厌氧诱导等)、激素响应(茉莉酮酸甲酯MeJ-A、脱落酸ABA等)、细胞周期调控等不同生命活动相关的调控元件(表3)。

Table 3
表3
表3VviSKOR启动子顺式作用元件分析
Table 3The cis-elements in the promoter regions of VviSKOR
顺式作用元件
cis-regulatory element
特征序列
Characteristic sequence
潜在调控途径
Putative regulatory pathway
CAAT-boxCAAT启动子和增强子区域
Promoter and enhancer regions
GATA-motifGATAGGG光感应 Light response
Sp1GGGCGG光感应 Light response
Box 4ATTAAT光感应 Light response
G-BoxCACGTT光感应 Light response
TCT-motifTCTTAC光感应 Light response
AREAAACCA厌氧诱导 Anaerobic induction
MSA-likeTCAAACGGT细胞周期调控 Cell cycle regulation
TGACG-motifTGACG茉莉酮酸甲酯响应
Methyl jasmonate response
CGTCA-motifCGTCA茉莉酮酸甲酯响应
Methyl jasmonate response
ABREACGTG脱落酸响应 Abscisic acid response
LTRCCGAAA低温感应Low temperature

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2.5 VviSKOR表达分析

Phytozome数据库表达谱分析表明,VviSKOR在根部的表达水平最高(约占65%),其次是叶(13%),此外,在木质部(6%)、果实(5%)、果皮(4%),雌蕊(4%)、花瓣(3%)和花粉(1%)中也有表达(图5)。

图5

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图5VviSKOR表达谱分析

Fig. 5Expression profiles analysis of VviSKOR



实时荧光定量PCR验证结果表明,VviSKOR在7年生‘马瑟兰’葡萄树不同组织、器官中的表达水平有差异:在根部的表达水平最高,其次是一年生韧皮部和新叶,在花序、花和果实(幼果、熟果)中的表达水平较低(图6)。

图6

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图6实时荧光定量PCR分析VviSKOR在7年生葡萄树不同组织的表达特征

Fig. 6Real time quantitative PCR expression analysis of VviSKOR in different tissues in 7-year-old grape tree



2.6 幼苗中VviSKOR对胁迫处理的响应

以‘马瑟兰’幼苗为材料,设置不同非生物胁迫处理,并进行实时荧光定量PCR分析。结果表明,VviSKOR主要在幼苗根部表达,在叶片和茎部表达量较低,再次证实该基因主要定位于葡萄根部并发挥作用。此外,VviSKOR在转录水平对不同胁迫处理的响应有差异,VviSKOR对缺钾、ABA和NaCl处理最为敏感,而对高钾胁迫没有响应,其中,缺钾和ABA处理分别显著抑制VviSKOR在幼苗根部、茎部和叶片中的表达水平,而NaCl处理则显著诱导VviSKOR在所有检测组织中的表达水平(图7)。

图7

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图7幼苗中VviSKOR对缺钾、高钾、ABA和NaCl处理的响应

**表示差异极显著(P<0.01)
Fig. 7Response of VviSKOR gene under K+ depletion, high K+, ABA and NaCl stresses in seedlings

**indicates statistically extremely significant differences (P<0.01)


2.7 VviSKOR的电生理功能

以转染pTracer-CMV3空载体的HEK293-T细胞作为空白对照,通过pCLAMP 10.0膜片钳系统记录pTracer-CMV3-SKOR在外界不同K+浓度条件下电流特征曲线。结果表明,表达pTracer-CMV3-SKOR的细胞记录到大量的外向整流电流,且外向电流随细胞外钾离子浓度的增加而降低,初步证实VviSKOR是一个典型的外流型钾离子通道(图8);此外,记录到的电流随着电压的增加而增加,说明VviSKOR也是电压依赖型钾离子通道。

图8

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图8利用膜片钳技术研究VviSKOR电生理功能

Fig. 8Physiological function of VviSKOR gene by using patch clamping



3 讨论

钾素营养与果树的生长发育、果实的品质和产量密切相关[1-3,25]。然而,大量报道主要体现在生理生化层面,果树钾素营养高效的分子机制研究很少。植物SKOR蛋白是一类外向整流型的Shaker类钾离子通道[4,8],在植物生长发育过程中起重要作用。21世纪以来,基因组测序技术迅猛发展,为植物科学研究提供了便利。本研究生物信息学分析表明,葡萄VviSKOR蛋白含有相同的植物Shaker类钾离子通道的功能结构域,包括6个跨膜区和GYGD通道标签序列,且多重序列比对显示,这些结构相似的通道属于同一家族,在其核心区域具有高度的序列一致性[2,3]。系统进化树分析表明不同物种SKOR通道成员在遗传进化关系上存在差异,禾本科植物(水稻、玉米、高粱和短柄草)SKOR同源蛋白一致性更高,在进化关系上更为紧密,相似地,蔷薇科植物(苹果、梨、桃和草莓)SKOR同源蛋白在遗传距离上更为相近。葡萄VviSKOR和黄瓜CsaSKOR在所检测植物的同源蛋白中紧密聚在一起,推测其生理功能可能具有相似性。

前人研究表明拟南芥AtSKORAtGORK等Shaker类离子通道基因主要定位于细胞膜上[2,3,4],本研究亚细胞定位预测也揭示葡萄VviSKOR主要定位在细胞膜和线粒体内膜上,仍需后续试验进一步验证。数据库表达谱表明基因VviSKOR主要在葡萄根部表达,与前人报道基本吻合[4,14,16-21];实时荧光定量PCR结果与表达谱分析结果一致,进一步验证VviSKOR在‘马瑟兰’成年树根部或幼苗根部的表达量均最高,推测该通道基因主要在葡萄根部钾素营养动态中发挥重要作用。

植物SKOR通道在K+动态平衡、渗透调节和质子调控中起重要作用,且在转录水平易受外界K+供应水平和干旱、ABA、NaCl等非生物胁迫的调控[14,16-21]。荧光定量PCR结果表明葡萄幼苗中VviSKOR缺钾显著下调VviSKOR的表达,与拟南芥[3]、甜瓜[14]、霸王[20]的报道一致,推测缺钾条件下SKOR表达量的下降,可能反映了植物本身缺钾时,没有过多的钾往地上部运输,所以减少了SKOR的需求量(表达丰度);作为一种抑制生长的植物激素,ABA显著抑制VviSKOR在转录水平的表达,与此同时,在VviSKOR启动子区域鉴定到ABA激素响应的顺式作用元件,暗示SKOR钾通道的活性易受ABA调控,具体机制需要进一步研究;相反地,NaCl显著上调VviSKOR的表达,与黄瓜[14]、霸王[20]和黑果枸杞[21]中的报道一致,充分证实SKOR钾通道的活性易受NaCl调控,且参与调控Na+/K+离子平衡和渗透势,具体机制亟待深入解析。此外,本研究发现VviSKOR对高钾胁迫没有响应,暗示葡萄树体中SKOR的丰度够多,足以维持其在高钾环境中正常发挥作用。

在生理功能水平上,植物SKOR蛋白是典型的外向整流型钾离子通道,属于钾离子选择性的Shaker类家族通道,在模式作物拟南芥和甜瓜中均已利用非洲爪蛙卵和双电极电压钳技术证明[3,14]。本研究利用膜片钳技术证实表达VviSKOR的HEK293-T细胞展现出外向整流型通道的特点:K+外排型电流,且通道活性(外向电流激活阈值)依赖于K+浓度,与拟南芥和甜瓜中K+电流特征的报道类似[3,14],但其在葡萄中运输K+的特点和具体调控机理还未清晰,与其他模式作物SKOR同源基因的功能差异尚无法进行比较。综上可知,VviSKOR是葡萄根中一个具有K+通透性的Shaker类外向整流型钾通道,K+可以调节VviSKOR的功能。

4 结论

从葡萄中鉴定并克隆了钾离子通道基因VviSKOR;葡萄VviSKOR与黄瓜CsaSKOR成员在遗传距离上较近;VviSKOR主要在葡萄根部表达,并在转录水平受缺钾、ABA和NaCl胁迫的调控;膜片钳研究表明VviSKOR是葡萄中一个电压门控的外排型钾离子通道。研究结果为解析果树内部离子动态平衡和钾素营养高效机制奠定了技术支撑,并为园艺作物的遗传改良与分子育种提供了基因资源和理论指导。

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DUAN L J, WANG P, CHEN M C, WANG S M. Cloning outward-rectifying potassium channel PtSKOR gene and constructing its RNAi vector in Halophyte Puccinellia tenuiflora
Molecular Plant Breeding, 2015,13(4):877-886. (in Chinese)

[本文引用: 1]

HU J, MA Q, KUMAR T, DUAN H R, ZHANG J L, YUAN H J, WANG Q, KHAN S A, WANG P, WANG S M. ZxSKOR is important for salinity and drought tolerance of Zygophyllum xanthoxylum by maintaining K+ homeostasis
Plant Growth Regulation, 2016,80(2):195-205

DOI:10.1007/s10725-016-0157-zURL [本文引用: 3]

刘丽萍, 戴逢斌, 张冲, 田菊, 陈金焕. 黑果枸杞外整流钾离子通道SKOR基因的克隆及表达分析
浙江农林大学学报, 2018,35(1):104-111.

[本文引用: 4]

LIU L P, DAI F B, ZHANG C, TIAN J, CHEN J H. Cloning and expression analysis of the SKOR gene for an outward rectifying K+ channel in Lycium ruthenicum
Journal of Zhejiang A&F University, 2018,35(1):104-111. (in Chinese)

[本文引用: 4]

王壮伟, 王庆莲, 夏瑾, 王西成, 宋志忠, 吴伟民. 葡萄KEA 家族基因的克隆、鉴定及表达分析
中国农业科学, 2018,51(23):4522-4534.

DOI:10.3864/j.issn.0578-1752.2018.23.011URL [本文引用: 4]
【Objective】 Isolation and characterization of KEA family genes from grape. Analysis of the tissue-specific expression patterns of KEA family genes and response to K + depletion, ABA, NaCl and sorbitol treatments. Screen the potential major KEA genes in grape. 【Method】 By carrying out homology-based cloning, putative KEA family genes were isolated and characterized from grape. A phylogenetic tree was constructed by multiple alignment of KEA family proteins from 9 known plants (grape, Arabidopsis, rice, maize, sorghum, slender false brome, polar, pear, and apple) using the neighbor-joining method via MEGA7.0 software. Details of grape KEA family genes and encoded proteins were analyzed with the help of bioinformatical analysis softwares. By screening the EST database, electrical expression profiles of grape KEA genes were determined. Quantitative real-time PCR (qRT-PCR) was carried out to analyze the expression patterns of KEA family genes and response to K + depletion, ABA, NaCl, and sorbitol treatments, and obtained the major genes. 【Result】 Four KEA family genes were isolated from grape, entitled by VvKEA1VvKEA4, which were all containing the K/H exchanger and TrkA-N functional domains that belonging to the classic plant KEA family antiporters. The amino acid sequences of KEA proteins from 9 plants shared an overall identity of 33.10%. These KEA members were classified into 2 major groups (Groups Ⅰ and Ⅱ), and VvKEA1and VvKEA2 belong to Group Ⅰ that containing 7 Motifs, while VvKEA3 and VvKEA4 belong to GroupⅡ that just containing 4 Motifs. Phylogenetic tree analysis showed that VvKEA1, VvKEA 2 and VvKEA 4 of grape were closely clustered with AtKEA2, AtKEA 3 and AtKEA 5 of Arabidopsis, respectively, and VvKEA3 was clustered with PbrKEA5 of pear and MdoKEA7 of apple. KEA members of 4 grass family plants (rice, maize, sorghum and slender false brome) were prone to clustered together, while three woody plants (polar, apple and pear) KEA members were prone to clustered together. Mainly localized in plasma membrane, all predicted VvKEA proteins possessed similar tertiary structures, contained 12 or 13 transmembrane domains (TMs), and the theoretical isoelectric point (pI) were all less than 7.0. In particular, only VvKEA3 possessed the signal peptide. Fifteen cis-acting regulatory elements, including the stress response, nutrition and development, hormone response and circadian rhythm regulations, et al., were identified in the promoter region of VvKEA genes. Expression profile analysis showed that VvKEA family genes were expressed in different tissues or organs in grape, and the highest percentage was predicted in fruit, followed by leaf, seed, root and pistil. qRT-PCR analysis showed that VvKEA3 was the most abundant expressed gene during different parts of 8-year-old ‘Rosario Bianco’ on the whole, especially in fruitlet, and the other 3 genes were less expressed with similar amount. In grape seedlings, VvKEA1VvKEA4 genes were more sensitive to ABA treatment, whose expression were all induced in both tested shoots and roots, but had no response to NaCl treatment. The expression of VvKEA3 in both shoots and roots and VvKEA1 in shoots were up-regulated by K + depletion treatment, and the expression of VvKEA3 in both shoots and roots and VvKEA4 in roots were increased by sorbitol treatment. 【Conclusion】 Four predicted KEA family genes were cloned and characterized from grape, which were majorly expressed in fruit, leaf and seed. Notably, VvKEA3 was the most abundant gene in 8-year old grape tree, especially in fruitlet, whose expression was prone to be regulated by K + depletion, ABA, and sorbitol osmotic stress. VvKEA3 may be a crucial K +/H + antiporter during grape fruit development.
WANG Z W, WANG Q L, XIA J, WANG X C, SONG Z Z, WU W M. Cloning, characterization and expression analysis of K+/H+ antiporter genes in grape
Scientia Agricultura Sinica, 2018,51(23):4522-4534. (in Chinese)

DOI:10.3864/j.issn.0578-1752.2018.23.011URL [本文引用: 4]
【Objective】 Isolation and characterization of KEA family genes from grape. Analysis of the tissue-specific expression patterns of KEA family genes and response to K + depletion, ABA, NaCl and sorbitol treatments. Screen the potential major KEA genes in grape. 【Method】 By carrying out homology-based cloning, putative KEA family genes were isolated and characterized from grape. A phylogenetic tree was constructed by multiple alignment of KEA family proteins from 9 known plants (grape, Arabidopsis, rice, maize, sorghum, slender false brome, polar, pear, and apple) using the neighbor-joining method via MEGA7.0 software. Details of grape KEA family genes and encoded proteins were analyzed with the help of bioinformatical analysis softwares. By screening the EST database, electrical expression profiles of grape KEA genes were determined. Quantitative real-time PCR (qRT-PCR) was carried out to analyze the expression patterns of KEA family genes and response to K + depletion, ABA, NaCl, and sorbitol treatments, and obtained the major genes. 【Result】 Four KEA family genes were isolated from grape, entitled by VvKEA1VvKEA4, which were all containing the K/H exchanger and TrkA-N functional domains that belonging to the classic plant KEA family antiporters. The amino acid sequences of KEA proteins from 9 plants shared an overall identity of 33.10%. These KEA members were classified into 2 major groups (Groups Ⅰ and Ⅱ), and VvKEA1and VvKEA2 belong to Group Ⅰ that containing 7 Motifs, while VvKEA3 and VvKEA4 belong to GroupⅡ that just containing 4 Motifs. Phylogenetic tree analysis showed that VvKEA1, VvKEA 2 and VvKEA 4 of grape were closely clustered with AtKEA2, AtKEA 3 and AtKEA 5 of Arabidopsis, respectively, and VvKEA3 was clustered with PbrKEA5 of pear and MdoKEA7 of apple. KEA members of 4 grass family plants (rice, maize, sorghum and slender false brome) were prone to clustered together, while three woody plants (polar, apple and pear) KEA members were prone to clustered together. Mainly localized in plasma membrane, all predicted VvKEA proteins possessed similar tertiary structures, contained 12 or 13 transmembrane domains (TMs), and the theoretical isoelectric point (pI) were all less than 7.0. In particular, only VvKEA3 possessed the signal peptide. Fifteen cis-acting regulatory elements, including the stress response, nutrition and development, hormone response and circadian rhythm regulations, et al., were identified in the promoter region of VvKEA genes. Expression profile analysis showed that VvKEA family genes were expressed in different tissues or organs in grape, and the highest percentage was predicted in fruit, followed by leaf, seed, root and pistil. qRT-PCR analysis showed that VvKEA3 was the most abundant expressed gene during different parts of 8-year-old ‘Rosario Bianco’ on the whole, especially in fruitlet, and the other 3 genes were less expressed with similar amount. In grape seedlings, VvKEA1VvKEA4 genes were more sensitive to ABA treatment, whose expression were all induced in both tested shoots and roots, but had no response to NaCl treatment. The expression of VvKEA3 in both shoots and roots and VvKEA1 in shoots were up-regulated by K + depletion treatment, and the expression of VvKEA3 in both shoots and roots and VvKEA4 in roots were increased by sorbitol treatment. 【Conclusion】 Four predicted KEA family genes were cloned and characterized from grape, which were majorly expressed in fruit, leaf and seed. Notably, VvKEA3 was the most abundant gene in 8-year old grape tree, especially in fruitlet, whose expression was prone to be regulated by K + depletion, ABA, and sorbitol osmotic stress. VvKEA3 may be a crucial K +/H + antiporter during grape fruit development.

LIVAK K J, SCHMITTGEN T D. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
Methods, 2001,25(4):402-408.

URLPMID:11846609 [本文引用: 1]

SU Y H, NORTH H, GRIGNON C, THIBAUD J B, SENTENAC H, VéRY A A. Regulation by external K+ in a maize inward shaker channel targets transport activity in the high concentration range
The Plant Cell, 2005,17(5):1532-1548.

DOI:10.1105/tpc.104.030551URLPMID:15805483 [本文引用: 1]
An inward Shaker K(+) channel identified in Zea mays (maize), ZmK2.1, displays strong regulation by external K(+) when expressed in Xenopus laevis (African clawed frog) oocytes or COS cells. ZmK2.1 is specifically activated by K(+) with an apparent K(m) close to 15 mM independent of the membrane hyperpolarization level. In the absence of K(+), ZmK2.1 appears to enter a nonconducting state. Thus, whatever the membrane potential, this maize channel cannot mediate K(+) influx in the submillimolar concentration range, unlike its relatives in Arabidopsis thaliana. Its expression is restricted to the shoots, the strongest signal (RT-PCR) being associated with vascular/bundle sheath strands. Based on sequence and gene structure, the closest relatives of ZmK2.1 in Arabidopsis are K(+) Arabidopsis Transporter 1 (KAT1) (expressed in guard cells) and KAT2 (expressed in guard cells and leaf phloem). Patch-clamp analyses of guard cell protoplasts reveal a higher functional diversity of K(+) channels in maize than in Arabidopsis. Channels endowed with regulation by external K(+) similar to that of ZmK2.1 (channel activity regulated by external K(+) with a K(m) close to 15 mM, regulation independent of external Ca(2+)) constitute a major component of the maize guard cell inward K(+) channel population. The presence of such channels in maize might reflect physiological traits of C4 and/or monocotyledonous plants.

宋志忠, 郭绍雷, 马瑞娟, 俞明亮. KT/HAK/KUP家族基因在桃开花期的表达及对钾肥施放的响应分析
中国农业科学, 2015,48(6):1177-1185.

DOI:10.3864/j.issn.0578-1752.2015.06.13URL [本文引用: 1]
【Objective】 The objective of this study is to analyze the transcriptional expression of KT/HAK/KUP family genes and response characteristics to potassium fertilizer application during different flowering stages, and key K+ transporter genes and its function. A close relationship between K+ nutritional status and flower development was discussed, thus providing a theoretical basis for K fertilization in orchards and genetic improvement and breeding of efficient horticulture crops.【Method】The K fertilizer treatment experiment was conducted via applying 834 g KCl (K2O content 60%) to each ‘Xiahui6’ peach tree at flower bud expanding stage. The effect of K fertilizer application on flower development, K+ nutritional status and blooming date of peach trees was analyzed. The K+ concentration of peach flowers at different developmental stages was determined by using ICP-AES apparatus with HNO3-HClO4 digestion method. Quantitative real-time PCR was used to analyze the expression profiles of KT/HAK/KUP family genes during the whole flowering process, and the key K+ transporter genes were identified. The response of KT/HAK/KUP family genes to K fertilizer application at different developmental stages was also revealed. Functions of the key genes were validated by using heterologous complementation of bacterial function lossing mutant. Coding sequence of KUP11 was cloned into pPAB404 vector to obtain the recombinant expression vector pPAB404-KUP11. Sequencing verified recombinant vector was then transformed into functional mutant E. coli strain TK2420. Whether the recombinant vector pPAB404-KUP11 can restore the ability of TK2420 mutant strain to uptake external K+, supplied with either KCl or K2SO4, was determined.【Result】Application of K fertilizer treatment favorably induced ‘Xiahui6’ flowers to bloom 2-day earlier, and specifically contributed to flower development at full bloom stage, with an increase of 21.5% in fresh weight. The highest K+ accumulation occurred at full-bloom stage, which was followed by begin bloom, bud period and petal fall stages. Potasium application significantly enhanced the K+ nutritional status, with an increase of 24.3%, 27.4%, 29.1% and 26.3% of K+ concentration, respectively, during four flowering stages. Genes of KUP1-13 were differentially expressed during the four stages, and the highest expression level appeared especially in full-bloom stage. The KT/HAK/KUP family genes were differentially regulated by K, i.e., KUP1 and KUP5 were most sensitive to Kapplication, whose expression was consistently induced from bud swell stage to full-bloom stage. KUP11 was the most expressed gene throughout the whole flowering process, which was highly up-regulated at bud swell stage but greatly reduced at petal fall stage by K treatment. The recombinant expression vector pPAB404-KUP11 can restore the K+ uptake capacity in TK2420 bacterial mutant, and can utilize either external KCl or K2SO4, indicating that the expression level of KUP11 was positively correlated with the K+ uptake of bacterial cells.【Conclusion】Application of K fertilizer favorably promotes peach flower development, improves the K+ nutritional status, makes peach flower early to open, and differentially regulated KT/HAK/KUP family genes at different flowering stages. KUP11 transporter possesses the capacity to uptake external K+, which may play an important role in peach flowering.
SONG Z Z, GUO S L, MA R J, YU M L. Analysis of expression of KT/HAK/KUP family genes and their responses to potassium fertilizer application during peach flowering
Scientia Agricultura Sinica, 2015,48(6):1177-1185. (in Chinese)

DOI:10.3864/j.issn.0578-1752.2015.06.13URL [本文引用: 1]
【Objective】 The objective of this study is to analyze the transcriptional expression of KT/HAK/KUP family genes and response characteristics to potassium fertilizer application during different flowering stages, and key K+ transporter genes and its function. A close relationship between K+ nutritional status and flower development was discussed, thus providing a theoretical basis for K fertilization in orchards and genetic improvement and breeding of efficient horticulture crops.【Method】The K fertilizer treatment experiment was conducted via applying 834 g KCl (K2O content 60%) to each ‘Xiahui6’ peach tree at flower bud expanding stage. The effect of K fertilizer application on flower development, K+ nutritional status and blooming date of peach trees was analyzed. The K+ concentration of peach flowers at different developmental stages was determined by using ICP-AES apparatus with HNO3-HClO4 digestion method. Quantitative real-time PCR was used to analyze the expression profiles of KT/HAK/KUP family genes during the whole flowering process, and the key K+ transporter genes were identified. The response of KT/HAK/KUP family genes to K fertilizer application at different developmental stages was also revealed. Functions of the key genes were validated by using heterologous complementation of bacterial function lossing mutant. Coding sequence of KUP11 was cloned into pPAB404 vector to obtain the recombinant expression vector pPAB404-KUP11. Sequencing verified recombinant vector was then transformed into functional mutant E. coli strain TK2420. Whether the recombinant vector pPAB404-KUP11 can restore the ability of TK2420 mutant strain to uptake external K+, supplied with either KCl or K2SO4, was determined.【Result】Application of K fertilizer treatment favorably induced ‘Xiahui6’ flowers to bloom 2-day earlier, and specifically contributed to flower development at full bloom stage, with an increase of 21.5% in fresh weight. The highest K+ accumulation occurred at full-bloom stage, which was followed by begin bloom, bud period and petal fall stages. Potasium application significantly enhanced the K+ nutritional status, with an increase of 24.3%, 27.4%, 29.1% and 26.3% of K+ concentration, respectively, during four flowering stages. Genes of KUP1-13 were differentially expressed during the four stages, and the highest expression level appeared especially in full-bloom stage. The KT/HAK/KUP family genes were differentially regulated by K, i.e., KUP1 and KUP5 were most sensitive to Kapplication, whose expression was consistently induced from bud swell stage to full-bloom stage. KUP11 was the most expressed gene throughout the whole flowering process, which was highly up-regulated at bud swell stage but greatly reduced at petal fall stage by K treatment. The recombinant expression vector pPAB404-KUP11 can restore the K+ uptake capacity in TK2420 bacterial mutant, and can utilize either external KCl or K2SO4, indicating that the expression level of KUP11 was positively correlated with the K+ uptake of bacterial cells.【Conclusion】Application of K fertilizer favorably promotes peach flower development, improves the K+ nutritional status, makes peach flower early to open, and differentially regulated KT/HAK/KUP family genes at different flowering stages. KUP11 transporter possesses the capacity to uptake external K+, which may play an important role in peach flowering.
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