基本信息ResearchTeachingPeoplePositionsPublications
--
Dr. Jie Li

Doctoral Supervisor

Education
1.1990-1994, School of Opto-electronic Information Science and Technology, Yantai University, Bachelor

2.1998-2001, School of Electronic and Information Engineering, Beihang University, Master

3.2003-2007, School of Computer Science and Technology, Harbin Institute of Technology, Ph.D.

Work Experience
2012~Present

Associate Professor, School of Computer Science and Technology, Harbin Institute of Technology
2008~2012

Postdoc, Asistant Research Officer,National Research Council Canada
2001-2003

Lenovo Corporate Research & Development, Engineer



Research fields
Big data analysis and miningPattern recognition，Artificial intelligenceBioinformatics,Cancer biomarker, Complex network


Funding
We have several fundings from Chinese Government， Heilong Jiang Province and Harbin Governments.

主要任职
Scientific activities:


1.Technical Program Committee members in the international conference on promotion of information technologyneering (ICPIT2016)

2.Paper review and publication committee members in the 5th International Conference on Biomedical Engineering and Biotechnology(ICBEB 2016)

2.Paper review and publication committee members in 2014 CCF China National Computer Congress
3.Member of Technical Program Committee in the international conference on biological information and engineering (ICBIE 2015)

4.Senior Member of china computer federation
5.Member of association for computing machinery
6.Professional Member of international society for computational biology

7.Program Committee members in the 27th International Conference on Genome Informatics, GIW 2016

8.Program Committee members in the 1st Genome Informatics Workshop / International Conference on Bioinformatics Joint Conference

9.Program Committee members in the 1st CCF bioinformatics conference (CBC2016)

10. Organizing Committee Member at the "internainal colloquium on Biotechnology& Industrial Revolution(BIOTECH-2017) ", 27-28,Nov. 2017, Brisbane, Australia.

11. program committee member at the "16th international conference on bioinformatics (InCOB 2017)",20-22,Sep. 2017, Shenzhen, China

12. program committee of CBC 2017(The second CCF Bioinformatics conference), 2017, Changsha, China

Editor of the peer review journals:

Journal of communications and information sciences,International Journal of Bioinformatics and Proteomics Review


Reviewer of multiplejournals:

Nature Communications, Scientific Reports,Pattern Recognition,BMC bioinformatics, Plos One, Information Science,Computers in Biology and Medicine,Computer Science and Information Technology，Progress in Biochemistry and Biophysics,Journal of Bioinformatics & Proteomics Review,Journal of Bioinformatics and Biological Engineering

Courses
1.Software development and practice

2.Biological software design and development

3.Biological network analysis



***
6 Candidate Ph.D

6 Master students

5 Bachelor students



We are looking for talented graduate students and post-docs interested in big data analysis and mining and bioinformatics.

A strong background in statistics is desired. Interested applicants should send CV to jieli@hit.edu.cn





招生信息
研究生招生:

每年具有 2个博士名额，3-4个硕士名额。

欢迎从事大规模数据挖掘与分析,人工智能, 复杂网络及生物信息研究的学生报考，欢迎具有较强统计知识，编程能力，英文基础的学生或数学,物理或生物医学基础比较好的学生与我联系。

In addition,two international students scholarship positions are available. We are looking for talented graduate students and postdoc interested in bioinformatics or computational biology. A strong background in statistics is desired. Interested applicants should send CV to jieli@hit.edu.cn.

HIT is one of the best global universities for engineering (http://www.usnews.com/education/best-global-universities/search?region=&subject=engineering&name= , http://www.shanghairanking.com/FieldENG2016.html), welcometo HIT!




.

新闻标题2015 International Conference on Biological Information and Engineering (ICBIE 2015)

发表时间2014-09-05

http://www.icbieconf.org/


新闻标题conference

发表时间2014-09-05

2015 International Conference on Biological Information and Engineering (ICBIE 2015)


新闻标题dfdsf

发表时间2014-09-05

sdfsdf


新闻标题2015 International Conference on Biological Information and Engineering (ICBIE 2015)

发表时间2014-09-05

http://www.icbieconf.org/


新闻标题2015 International Conference on Biological Information and Engineering (ICBIE 2015)

发表时间2014-09-05

http://www.icbieconf.org/


新闻标题哈尔滨空气质量指数

发表时间2015-01-28

http://www.pm25.in/haerbin


新闻标题哈尔滨空气质量指数

发表时间2015-01-28

哈尔滨空气质量指数

http://www.pm25.in/haerbin


新闻标题weather

发表时间2015-01-28

哈尔滨空气质量指数

http://www.pm25.in/haerbin


新闻标题.

发表时间2015-07-22

Senior Member of China Computer Federation

Member of Association of Computing Machinery

Lifetime Professional Member of International Society for Computational Biology


新闻标题Professional Affiliations

发表时间2015-07-22

Senior Member of China Computer Federation

Member of Association of Computing Machinery

Lifetime Professional Member of International Society for Computational Biology




新闻标题Welcome!!!

发表时间2015-09-16

...

Part of Journal Publications
Catherine Francis Mangare, Jie Li, et al, Construction of disease, gene variant, and drug relation knowledge base, (submitted,2018) Serge Thomas Mickala Bourobou, Jie Li*, et al, Deep autostacking classifiers for sensor-based activity recognition performance in smart homes. (submitted, 2018) Wang Dong, Jie Li, et al., Optimization of gene set annotations combining GO structure and gene expression data,(accepted, 2018) Serge Thomas Mickala Bourobou, Jie Li*, et al,Improving activity recognition performancebased on stacking ensemblelearning in smart homes,(submitted,2018)
Serge Thomas Mickala Bourobou, Jie Li*,et al,Ensembleof deep autoencoder classifiers for activity recognition based on sensor modalities in smarthomes (accepted,2018) Catherine Francis Mangare, Jie Li*, a survey on indigenous knowledge systems databases for african traditional medicines (accepted,2018) Hanqing Xue,Jie Li*, et al. Review of drug repositioning approaches and resources, (accepted,2018) Qiaosheng Zhang, Jie Li*, et al, Finding disagreement pathway signatures and constructing an ensemble model for cancer classification scientific reports, 2017.08 Haozhe Xie, Jie Li*,et al, A survey of dimensionality reduction techniques based on random projection,(Submitted,2017) Qiaosheng Zhang Jie Li*, et al, A network-based pathway-expanding approach for pathway analysis, BMC bioinformatics,2016,17:1333 Haozhe Xie, Jie Li*, Qiaosheng Zhang, et al. Comparion among dimesonality reductin techniques based on random projection for cancer classification,Computational biology and chemistry,2016.9:21 Yanshuo, Zhenxing Wang, Rongjie Wang, Yining Xu, Ningyi Zhang, Jie Li, Yang Hu, Jianguo Lu,Yadong Wang, WDNfindr: A method for minimum driver node detection in directed weighted biological network, 2016 (accepted) Qiaosheng Zhang, Jie Li*, et al, network-based methods for identifying critical pathways of complex diseases:survey, molecular biosystems,2016,12:1082-1089 Phuong U Le, Jie Li, Christiane Cantin, Catherine Collins,Andre Nantel, Tammy-Lynn Tremblay, John F Kelly,Edwin Wang, Maureen D O’Connor-McCourt,Anne EG Lenferink, Molecular Characterization of the Vasculature of Patients with Infiltrating Ductal Carcinoma Generates a Gene Signature Predictive of Breast Cancer Survival, Journal of Cancer biology and research,2015
LI Jie, CHU Yan-Shuo, CHENG Liang, WANG Ya-Dong^#, KONG Lei-Lei. Disease Ontology-based Methods for Disease Similarity Measurement [J]. Progress in Biochemistry and Biophysics, 2015, 42(2): 115-122 (SCI, IF:0.324)

JJ Hill, Tammy-Lynn Tremblay, Fran？ois Fauteux,Jie Li,Edwin Wang,Adriana Aguilar-Mahecha,Mark Basik,Maureen OConnor McCourt,Glycoproteomic Comparison of Clinical Triple-Negative and Luminal Breast Tumors,J. Proteome Res., 2015, 14 (3), pp 1376–1388 (SCI, IF:5.11) Liang Cheng, Jie Li*, Yang Hu, Yadong wang^#, et al. Using semantic association to extend and infer literature-based relativity between terms, IEEE Transactions on Computational Biology and Bioinformatics.2015, 9:1 (SCI, IF:1.438) Zhang Haichuan, LI Jie*, WANGYa-Dong^#, Progress on Web-based Genome Browser Technology. Progress in Biochemistry and Biophysics 2014, 41(11): 1182~1190(SCI, IF:0.324) Liang Cheng, Jie Li^*, Peng Ju, Jiajie Peng, Yadong Wang^#_. SemFunSim: a new method for measuring disease similarity by fusing semantic association and gene co-function, PLoS ONE 9(6): e99415,2014 (SCI, IF: 3.23) Juan Liran,Teng Mingxiang,Zang Tianyi,Hao Yafeng,Wang Zhenxing,Yan hengwu,LiuYongzhuang,Li Jie,Zhang Tianjiao,Wang Yadong.The Personal Genome Browser: Visualizing Functions of Genetic Variants. Nucleic Acids Res. 2014 May 5 (SCI, IF:9.11) Liang Cheng, Guohua Wang,Jie Li,Yadong Wang, SIDD: a Semantically Integrated Database towards a Global View of Human Disease, PLoS ONE. 8(10):e75504.2013 (SCI, IF:3.23，google cited 10 times) Jennifer J. Hill, Tammy-Lynn Tremblay, Ally Pen, Jie Li, Anna C. Robotham, Anne E. G. Lenferink, Edwin Wang, Maureen O’Connor- McCourt, and John F. Kelly. Identification of vascular breast tumor markers by laser capture microdissection and label-free LC-MS, J ournal ofProteome Research,10:2479- 2493,2011(SCI,IF:5.113,google cited 34 times) Jie Li, Edwin Wang,A Multiple Survival Screening algorithm (MSS) for identifying high-quality cancer prognostic markers,NatureProtocol Exchange (2011)doi: 10.1038 /protex.2011.211 Jie Li, Anne E.G. Lenferink,Yinghai Deng,Catherine Collins,Qinghua Cui,Enrico O. Purisima,Maureen D. O@#%Connor-McCourt，Edwin Wang，Identification of high quality cancer prognostic markers and metastasis network modules, Nature Communications,1:34,2010(SCI Index, IF:11.47, reported by: nature highlight news, science daily, canada cnrc news,SciBX,Genetic Engineering&Biotechnology, etc. ）(SCI, IF:11.47,google cited 201 times) Cong Fu, Jie Li, Edwin Wang. Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression. Molecular Biosystems，5:1809-1816, 2009(SCI, IF:3.21, google cited 16 times) Jie Li, Xianglong Tang, Jiafeng Liu, Jianhua Huang,Yadong Wang. A novel approach to feature extraction from classification models based on information gene pairs.Pattern Recognition,41(6):1975-1984,2008（http://www.sciencedirect.com/science/article/pii/S**5122）(SCI, IF:3.09, google cited 13 times) Jie Li, Xianglong Tang, Wei. Zhao, Jianhua Huang. A new framework for identifying differentially expressed genes. Pattern Recognition, 40 (11):3249-3262,2007(http://www.sciencedirect.com/science/article/pii/S**0830）(SCI, IF: 3.09, google cited 11 times) Jie Li, Xianglong Tang. A new classification model with simple decision rule for discovering optimal feature gene pairs. Computers in Biology and Medicine, 40(11):1637-1646, 2007（http://www.sciencedirect.com/science/article/pii/S**0613）(SCI, IF:1.24, google cited 13 times) Jie Li, Xianglong Tang, Xia Li. A novel visualization classifier and its applications. Lecture Notes in Computer Science, 3614:1190-1199, 2005 (SCI) http://www.sciencedirect.com/science/article/pii/S**04108


Books
1. bioinformatics data analysis

2. Cancer system biology

Patents
We have several PCT patents and USA patents