其他题名Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus
Liu, Xiao; Li, Chao; Chen, Min
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发表期刊SCIENTIFIC DATA
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ISSN2052-4463
2020-03-23
卷号7期号:1页码:99
关键词PHYLOGENETIC ANALYSISDATABASECLASSIFICATIONADAPTATIONSELECTIONALIGNMENTPROGRAMGENESTOOL
研究领域Multidisciplinary Sciences
DOI10.1038/s41597-020-0441-7
产权排序[Liu, Xiao] Zhejiang Ocean Univ, Sch Fishery, Zhoushan 316022, Peoples R China; [Li, Chao; Liu, Bo; Wang, Chunde] Qingdao Agr Univ, Marine Sci & Engn Coll, Qingdao 266109, Peoples R China; [Chen, Min] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China; [Chen, Min; Ning, Junhao; Wang, Chunde] Chinese Acad Sci, Ctr Ocean Mega Sci, Yantai 264003, Peoples R China; [Ma, Bin; Liu, Guilong] Yantai Spring Sea Aquaseeds Co Ltd, Yantai 264006, Peoples R China; [Zhong, Zhaoshan] Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China; [Shi, Qiong] BGI Acad Marine Sci, Guangdong Prov Key Lab Mol Breeding Marine Econ A, Shenzhen Key Lab Marine Gen, BGI Marine, Shenzhen 518083, Peoples R China
通讯作者Wang, Chunde(chundewang2007@163.com)
作者部门中科院烟台海岸带研究所知识产出
英文摘要The two subspecies of Atlantic bay scallop (Argopecten irradians), A. i. irradians and A. i. concentricus, are economically important aquacultural species in northern and southern China. Here, we performed the whole-genome sequencing, assembly, and gene annotation and produced draft genomes for both subspecies. In total, 253.17 and 272.97 gigabases (Gb) of raw reads were generated from Illumina Hiseq and PacBio platforms for A. i. irradians and A. i. concentricus, respectively. Draft genomes of 835.7 Mb and 874.82 Mb were assembled for the two subspecies, accounting for 83.9% and 89.79% of the estimated sizes of their corresponding genomes, respectively. The contig N50 and scaffold N50 were 78.54 kb and 1.53 Mb for the A. i. irradians genome, and those for the A. i. concentricus genome were 63.73 kb and 1.25 Mb. Moreover, 26,777 and 25,979 protein-coding genes were predicted for A. i. irradians and A. i. concentricus, respectively. These valuable genome assemblies lay a solid foundation for future theoretical studies and provide guidance for practical scallop breeding. Measurement(s)DNA center dot genome center dot RNA center dot transcriptome center dot sequence_assembly center dot sequence feature annotationTechnology Type(s)DNA sequencing assay center dot RNA sequencing center dot sequence assembly process center dot sequence annotationSample Characteristic - OrganismArgopecten irradians Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.11961984
中文摘要The two subspecies of Atlantic bay scallop ( Argopecten irradians ), A. i. irradians and A. i. concentricus , are economically important aquacultural species in northern and southern China. Here, we performed the whole-genome sequencing, assembly, and gene annotation and produced draft genomes for both subspecies. In total, 253.17 and 272.97 gigabases (Gb) of raw reads were generated from Illumina Hiseq and PacBio platforms for A. i. irradians and A. i. concentricus , respectively. Draft genomes of 835.7?Mb and 874.82?Mb were assembled for the two subspecies, accounting for 83.9% and 89.79% of the estimated sizes of their corresponding genomes, respectively. The contig N50 and scaffold N50 were 78.54?kb and 1.53?Mb for the A. i. irradians genome, and those for the A. i. concentricus genome were 63.73?kb and 1.25?Mb. Moreover, 26,777 and 25,979 protein-coding genes were predicted for A. i. irradians and A. i. concentricus , respectively. These valuable genome assemblies lay a solid foundation for future theoretical studies and provide guidance for practical scallop breeding.
文章类型Article; Data Paper
资助机构National Natural Science Foundation of ChinaNational Natural Science Foundation of China [31572618, 31972791, 41676152]; Earmarked Fund for Agriculture Seed Improvement Project of Shandong Province [2017LZGC009]; Earmarked Fund for Shandong Modern Agro-Industry Technology Research System [SDAIT-14]
收录类别SCI
语种英语
关键词[WOS]PHYLOGENETIC ANALYSIS; DATABASE; CLASSIFICATION; ADAPTATION; SELECTION; ALIGNMENT; PROGRAM; GENES; TOOL
研究领域[WOS]Science & Technology - Other Topics
WOS记录号WOS:000522091500002
引用统计被引频次:7[WOS][WOS记录][WOS相关记录]
文献类型期刊论文
条目标识符http://ir.yic.ac.cnhttp://ir.yic.ac.cn/handle/133337/25065
专题中科院烟台海岸带研究所知识产出
中国科学院烟台海岸带研究所
作者单位1.Zhejiang Ocean Univ, Sch Fishery, Zhoushan 316022, Peoples R China;
2.Qingdao Agr Univ, Marine Sci & Engn Coll, Qingdao 266109, Peoples R China;
3.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China;
4.Chinese Acad Sci, Ctr Ocean Mega Sci, Yantai 264003, Peoples R China;
5.Yantai Spring Sea Aquaseeds Co Ltd, Yantai 264006, Peoples R China;
6.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China;
7.BGI Acad Marine Sci, Guangdong Prov Key Lab Mol Breeding Marine Econ A, Shenzhen Key Lab Marine Gen, BGI Marine, Shenzhen 518083, Peoples R China
推荐引用方式
GB/T 7714Liu, Xiao,Li, Chao,Chen, Min,et al. Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus[J]. SCIENTIFIC DATA,2020,7(1):99.
APALiu, Xiao.,Li, Chao.,Chen, Min.,Liu, Bo.,Yan, Xiaojun.,...&Wang, Chunde.(2020).Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus.SCIENTIFIC DATA,7(1),99.
MLALiu, Xiao,et al."Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus".SCIENTIFIC DATA 7.1(2020):99.
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