主要从事生物医学成像和图像视频处理、计算机视觉和机器学习、信号处理和生命科学仪器、以及科技分类评价和创新机制等方面的研发活动。主持多项国家自然科学基金面上项目、上海市及企业合作项目，他的团队自主研发了已用于临床和科研的计算机辅助手术导航系统、生物发光和荧光成像系统等。

1. Dongdong Hao, Song Ding, Linwei Qiu, Yisong Lv, Baowei Fei, Yueqi Zhu, Binjie Qin*, Sequential vessel segmentation via deep channel attention network, Neural Networks (IF: 5.535, JCR1区，中科院1区), 128: 172-187, 2020. Code 

2. Kunqiang Mei, Bin Hu, Baowei Fei, and Binjie Qin*, Phase asymmetry ultrasound despeckling with fractional anisotropic diffusion and total variation, IEEE Transactions on Image Processing (IF: 9.34, JCR1区，中科院1区), 29(1): 2845-2859, 2020. Code

3. Sanqian Li, Binjie Qin, Jin Xiao, Qiegen Liu*, Yuhao Wang, Dong Liang*, Multi-channel and Multi-model based Autoencoding Prior for Grayscale Image Restoration, IEEE Transactions on Image Processing (IF: 9.34, JCR1区，中科院1区), 29(1): 142-156, 2020. Code 

4. Wenzhao Zhao, Qiegen Liu, Yisong Lv, and Binjie Qin*, Texture variation adaptive image denoising with nonlocal PCA，IEEE Transactions on Image Processing (IF: 9.34, JCR1区，中科院1区), 28(11): 5537-5551, 2019. Code 

5. Binjie Qin*, Mingxin Jin, Dongdong Hao, Yisong Lv, Qiegen Liu, Yueqi Zhu, Song Ding*, Jun Zhao, Baowei Fei, Accurate Vessel Extraction via Tensor Completion of Background Layer in X-ray Coronary Angiograms, Pattern Recognition (IF: 7.196, JCR1区), 87: 38-54, 2019.

6. Mingxin Jin, Dongdong Hao, Song Ding*, Binjie Qin*, Low-rank and sparse decomposition with spatially adaptive filtering for sequential segmentation of 2D+t vessels, Physics in Medicine and Biology (IF: 2.883, JCR2区), 63(17): 17LT01, 2018.

7. Binjie Qin*, Zhuangming Shen, Zeshan Fu, Zien Zhou, Yisong Lv, and Jinsong Bao*, Joint-saliency structure adaptive kernel regression with adaptive-scale kernels for deformable registration of challenging images, IEEE Access (IF: 3.745, JCR1区), 6: 330-343, 2018.

8. Mingxin Jin, Rong Li, Jian Jiang, Binjie Qin*, Extracting contrast-filled vessels in X-ray angiography by graduated RPCA with motion coherency constraint, Pattern Recognition (IF: 7.196, JCR1区), 63: 653-666, 2017. Code 

9. Binjie Qin*, Chen Hu, and Shaosen Huang, Target/background Classification Regularized Nonnegative Matrix Factorization for Fluorescence Unmixing, IEEE Transactions on Instrumentation and Measurement (IF: 3.658, JCR2区), 65(4): 874-889, 2016. Code 

10. Binjie Qin*, Zhuangming Shen, Zien Zhou, Jiawei Zhou, and Yisong Lv, Structure Matching Driven by Joint-Saliency-Structure Adaptive Kernel Regression, Applied Soft Computing (IF: 5.472, JCR1区), 46: 851-867, 2016.

11. Feng Zhu, Binjie Qin*, Weiyue Feng, Huajian Wang, Shaosen Huang, Yisong Lv, Yong Chen, Reducing Poisson noise and baseline in X-ray spectral images with bootstrap Poisson regression and robust nonparametric regression, Physics in Medicine and Biology (IF: 2.883, JCR2区), 58(6): 1739-1758, 2013. Code