姓名：钟 扬
出生年月：1964年5月
联系地址:上海市邯郸路220号 复旦大学生命科学学院 立人生物楼236室
电话: 021-65642263
传真: 021-65642468
E-mail: yangzhong@fudan.edu.cn



简历：1984年毕业于中国科学技术大学少年班；1984 – 1999年任中国科学院武汉植物研究所研究实习员、助理研究员、副研究员(1992)、研究员(1996)、副所长(1997)；1992-1998年曾在University of California-Berkeley和Michigan State University进行合作研究4年；2000年起任复旦大学生命科学学院教授,植物学博士生导师；现任生物多样性与生态工程教育部重点实验室副主任,上海生物信息技术研究中心副主任；兼任北京大学理论生物学中心教授,中国科学院华南植物研究所博士导师

主要研究方向: 生物信息学, 分子进化与系统发育

承担的科研项目:
[1] 主持国家自然科学基金项目 “红树科的分子进化及最大似然模型与程序研究”.
[2] 主持上海市科委重大项目课题 “植物抗逆基因资源数据库与信息分析工具” .
[3] 主持863项目“植物抗盐碱与抗旱基因的整合信息技术平台及其应用”.
[4] 参加973项目 “基于生物信息学的药物靶标的发现与验证研究”.

获奖情况：2001年获中国高校自然科学一等奖(排名第二).

代表性论文：
[1] Jung, S., Perkins, S., Zhong, Y., Pramanik, S., Beaman, J. H. 1995. A new data model for biological classification. Computer Applications in Biosciences (CABIOS) 11: 237-246.
[2] Zhong, Y., Jung, S, Pramanik, S, Beaman, J H. 1996. Data model and comparison and query methods for interacting classifications in a taxonomic database. Taxon 45(2): 223-241.
[3] Zhong, Y., Meacham, C. A., Pramanik, S. 1997. A general method for tree-comparison based on subtree similarity and its use in a taxonomic database. BioSystems 42: 1-8.
[4] Zhong, Y., Luo, Y., Pramanik, S., Beaman, J. H. 1999. HICLAS: a taxonomic database system for displaying and comparing biological classification and phylogenetic trees. Bioinformatics 15(2): 149-156.
[5] Zhong, Y., Shi, S. H., Tang, X. H., Huang, Y. L., Tan, F. X., Zhang, X. Y. 2000. Testing relative evolutionary rates and estimating divergence times among six genera of Rhizophoraceae using cpDNA and nrDNA sequences. Chinese Science Bulletin 45: 1011-1015.
[6] Shi, S., Jin, H., Zhong, Y., He, X., Huang, Y., Tan, F., Boufford, D. E. 2000. Phylogenetic relationships of the Magnoliaceae inferred from cpDNA matK sequences. Theoretical and Applied Genetics 101: 925-930.
[7] Sang, T., Zhong, Y. 2000. Testing hybridization hypotheses based on incongruent gene trees. Systematic Biology 49: 422-434.
[8] Cui, X. H., Zhong, Y., Chen, J. K. 2000. Influence of a catastrophic flood on densities and biomasses of three plant species in Poyang Lake, China. Journal of Freshwater Ecology 15: 537-541.
[9] He, Z. C., Zhang, X. Y., Zhong, Y., Ye, L. 2000. Phylogenetic relationships of Actinidia and related genera based on micromorphological characters of foliar trichomes. Genetic Resources and Crop Evolution 47: 627-639.
[10] Wang, J. B., Wang, C., Shi, S. H., Zhong, Y. 2000. ITS regions in diploids of Aegilops (Poaceae) and their phylogenetic implications. Hereditas 132: 209-213.
[11] Wang, J. B., Wang, C., Shi, S. H., Zhong, Y. 2000. Evolution of parental ITS regions of nuclear rDNA in allopolyploid Aegilops (Poaceae) species. Hereditas 133: 1-7.
[12] Zhong, Y., Zhang, L., Su, D. M. 2000. Collaborations tailored for bioinformatics projects. Science 290: 2074. (Letter)
[13] Shi, S., Huang, Y., Zhong, Y., Du, Y., Zhang, Q., Chang, H., Boufford, D.E. 2001. Phylogeny of the Altingiaceae based on cpDNA matK, PY-IGS and nrDNA ITS sequences. Plant Systematics and Evolution 230: 13-24.
[14]Wu, J., Liang, Y., Zhong, Y., Fu, C., Chen, J. 2002. Advances in phylogenetic studies of Nematoda. Chinese Science Bulletin 47: 10-15.
[15] Huang, Y., Shi, S., Zhong, Y., Tan, F. 2002. A new method for preparation of template DNA for PCR from special plant materials. Chinese Science Bulletin 47: 725-727.
[16] Shi, S., Zhong, Y., Huang, Y., Du, Y., Qiu, X., Chang, H. 2002. Phylogenetic relationships of the Rhizophoraceae in China based on sequences of the chloroplast gene matK and the internal transcribed spacer regions of nuclear ribosomal DNA and combined data set. Biochemical Systematics and Ecology 30: 309-319.
[17] Zhong, Y., Zhao, Q., Shi, S., Huang, Y., Hasegawa, M. 2002. Detecting evolutionary rate heterogeneity among mangroves and their close terrestrial relatives. Ecology Letters 5(3): 427-432.
[18]Nan, P., Peng, S., Zhang, Y., Zhong, Y. 2002. Composition of volatile oil of Primula obconica in Central China. Natural Product Letters 16(4): 249-253. (Corresponding author)
[19] Tian, C., He, X., Zhong, Y., Chen, J. 2002. Effects of VA mycorrhizae and Frankia dual inoculation on growth and nitrogen fixation of Hippophae Tibetan. Forest Ecology and Management 176: 307-312.
[20] Yang, J., Huang, J., Gu, H., Zhong, Y., Yang, Z. 2002. Duplication and adaptive evolution of the chalcone synthase genes of Dendranthema (Asteraceae). Molecular Biology and Evolution 19: 1752-1759.
[21] Tan, F., Shi, S., Zhong, Y., Gong, X., Wang, Y. 2002. Phylogenetic relationships of Combretoideae (Combretaceae) inferred from plastid, nuclear gene and spacer sequences. Journal of Plant Research 115: 475-481.
[22] Nan, P., Shi, S., Peng, S., Tian, C., Zhong, Y. 2003. Genetic diversity in Primula obconica from Central and South-west China as revealed by ISSR markers. Annals of Botany 91: 329-333. (Corresponding author)
[23] Nan, P., Peng, S., Shi, S., Ren, H., Yang, J., Zhong, Y. 2003. Interpopulation congruence in Chinese Primula ovalifolia revealed by chemical and molecular markers using essential oils and ISSRs. Zeitschrift fur Naturforschung 58c: 57-61. (Corresponding author)
[24] Tian, C., He, X., Zhong, Y., Chen, J. 2003. Effect of inoculation with ecto- and arbuscular mycorrhizae and Rhizobium on the growth and nitrogen fixation by black locust, Robinia pseudoacacia. New Forests 25: 125-131.
[25]Zhong, Y., Zhang, X., Ma, J., Zhang, L. 2003. Rapid development of bioinformatics education in China. Journal of Biological Education 37: 75-79.
[26] Zhang, X., Zhong, Y., Chen, J. 2003. Fanwort in Eastern China: an invasive aquatic plant and potential ecological consequences. AMBIO 32: 158-159.
[27] Lei, Y., Nan, P., Tsering, T., Bai, Z., Tian, C., Zhong, Y. 2003. Chemical composition of the essential oils of two Rhodiola species from Tibet. Zeitschrift fur Naturforschung 58c: 161-164. (Corresponding author)
[28] Yu, X. J., Luo, C., Lin, J., Hao, P., He, Y., Guo, Z., Qin, L., Su, J., Liu, B., Huang, Y., Nan, P., Li, C., Xiong, B., Luo, X., Zhao, G., Pei, G., Chen, K., Shen, X., Zou, J., He, W., Shi, T., Zhong, Y., Jiang, H., Li, Y. 2003. Putative hAPN receptor binding sites in SARS_CoV spike protein. Acta Pharmacologica Sinica 24: 481-488. (One of corresponding authors)
[29] Qin, L., Xiong, B., Luo, C., Guo, Z. M., Hao, P., Su, J., Nan, P., Feng, Y., Shi, Y. X., Yu, X. J., Luo, X. M., Chen, K. X., Shen, X., Shen, J. H., Zou, J, P., Zhao, G. P., Shi, T. L., He, W. Z., Zhong, Y., Jiang, H. L., Li, Y. X. 2003. Identification of probable genomic packaging signal sequence from SARS_CoV genome by bioinformatics analysis. Acta Pharmacologica Sinica 24: 489-496. (One of corresponding authors)
[30] Yuan, C., Nan, P., Shi, S., Zhong, Y. 2003. Chemical composition of the essential oils of two Chinese endemic Meconopsis species. Zeitschrift fur Naturforschung 58c: 313-315. (Corresponding author)
[31] Pang, J., Wang, Y., Zhong, Y., Hoelzel, A. R., Papenfuss, T. J., Zeng, X., Ananjeva, N. B., Zhang, Y. P. 2003. A phylogeny of Chinese species in the genus Phrynocephalus (Agamidae) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 27: 398-409.
[32] Ren, W., Zhong, Y., Meligrana, J., Anderson, B., Watt, W. E., Chen, J., Leung, H. L. 2003. Urbanization, land use, and water quality in Shanghai: 1947-1996. Enviroment International 29: 649-659.
[33] Shi, S., Du, Y., Boufford, D. E., Gong, X., Huang, Y., He, H., Zhong, Y. 2003. Phylogenetic position of Schnabelia, a genus endemic to China: Evidence from sequences of cpDNA matK gene and nrDNA ITS regions. Chinese Science Bulletin 48: 1576-1580. (Corresponding author)
[34] Tang, T., Zhong, Y., Jian, S., Shi, S. 2003. Genetic diversity of Hibiscus tiliaceus (Malvaceae) in China assessed using AFLP makers. Annals of Botany 92: 409-414.
[35] The Chinese SARS Molecular Epidemiology Consortium. 2004. Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science 303: 1666-1669. (Equal first author)
[36] Tian, C., Nan, P., Chen, J., Zhong, Y. 2004. Volatile composition of Chinese Hippophae rhamnoides and its chemotaxonomic implications. Biochemical Systematics and Ecology 32: 431-441. (Corresponding author)
[37] Tian, C., Lei, Y., Shi, S., Nan, P., Chen, J., Zhong, Y. 2004. Genetic diversity of sea buckthorn (Hippophae rhamnoides) populations in northeastern and northwestern China as revealed by ISSR markers. New Forests 27: 229-237. (Corresponding author)
[38] Lei, Y., Nan, P., Tsering, T., Wang, L., Liu, S., Zhong, Y. 2004. Interpopulation variability of rhizome essential oils in Rhodiola crenulate from Tibet and Yunnan, China. Biochemical Systematics and Ecology 32: 611-614. (Corresponding author)
[39] Jian, S., Tang, T., Zhong, Y., Shi, S. 2004. Variation in inter-simple sequence repeat (ISSR) in mangrove and non-mangrove populations of Heritiera littoralis (Sterculiaceae) from China and Australia. Aquatic Botany 79: 75-86.
[40] He, S., Liu, H., Chen, Y., Kuwahara, M., Nakajima, T., Zhong, Y. 2004. Molecular phylogenetic relationships of Eastern Asian Cyprinidae (Pisces: Cypriniformes) inferred from cytochrome b sequences. Science in China Ser. C 47: 130-138.
[41] Zhao, J., Nan, P., Zhong, Y. 2004. Chemical composition of the essential oils of Clausena lansium from Hainan Island, China. Zeitschrift fur Naturforschung 59c: 153-156. (Corresponding author)
[42] Nan, P., Hu, Y., Zhao, J., Feng, Y., Zhong, Y. 2004. Chemical composition of the essential oils of two Alpinia species from Hainan Island, China. Zeitschrift fur Naturforschung 59c: 157-160. (Corresponding author)
[43] Qin, Z., Zhong, Y., Zhang, J., He, Y., Wu, Y., Jiang, J., Chen, J., Luo, X., Qu, D. 2004. Bioinformatics analysis of two-component regulatory systems in Staphylococcus epidermidis. Chinese Science Bulletin 49: 1267-1271. (Corresponding author)
[44] Zhang, Y., Zheng, N., Hao, P., Zhong, Y. 2004. Reconstruction of the most recent common ancestor sequences of SARS-Cov S gene and detection of adaptive evolution in the spike protein. Chinese Science Bulletin 49: 1311-1313. (Corresponding author)
[45] Cao, S., Qin, L., He, W., Zhong, Y., Zhu, Y., Li, Y. 2004. Semantic search among heterogeneous biological databases based on gene ontology. Acta Biochimica et Biophysica Sinica 36: 365-370.
[46] Wang, L., Jian, S., Nan, P., Zhong, Y. 2004. Chemical composition of the essential oil of Elephantopus scaber from southern China. Zeitschrift fur Naturforschung 59c: 327-329. (Corresponding author)
[47] Tian, C., Nan, P., Shi, S., Chen, J., Zhong, Y. 2004. Molecular genetic variation in Chinese populations of three subspecies of Hippophae rhamnoides. Biochemical Genetics 42: 259-267. (Corresponding author)
[48] Ren, Z., Ma, E., Guo, Y., Zhong, Y. 2004. A molecular phylogeny of Oxya (Orthoptera: Acridoidea) in China inferred from partial cytochrome b gene sequences. Molecular Phylogenetics and Evolution 33: 516-521.
[49] Tang, T., Huang, J., Zhong, Y., Shi, S. 2004. High-throughput S-SAP by fluorescent multiplex PCR and capillary electrophoresis in plants. Journal of Biotechnology 114: 59-68.
[50] Chen, Z., Li, B., Zhong, Y., Chen, J. 2004. Local competitive effects of introduced Spartina alterniflora on Scirpus mariqueter at Dongtan of Chongming Island, the Yangtze river estuary and their potential ecological consequences. Hydrobiologia 528: 99-106.
[51] Zhang, L., Wu, G., Xu, Y., Li, W., Zhong, Y. 2004. Multilingual collection retrieving via ontology alignment. Lecture Notes in Computer Science 3334: 510-514.
[52] Chen, Y., Zhong, Y., Tian, B., Yang, J., Li, D. 2005. Statistical analysis on adaptive evolution of SQUA genes in angiosperms. Progess in Natural Science 15: 93-96.
[53] Fu, C., Luo, J., Wu, J., Lopez, A., Zhong, Y., Lei, G., Chen, J. 2005. Phylogenetic relationships of salangid fishes (Osmeridae, Salanginae) with comments on phylogenetic placement of the salangids based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 35: 76-84.
著作 [1] 钟扬, 陈家宽, 黄德世, 1990. 数量分类的方法与程序. 武汉大学出版社. [2] 钟扬, 李伟, 黄德世, 1994. 分支分类的理论与方法. 科学出版社. [2] 李伟, 钟扬编译, 1992. 水生植被研究的理论与方法. 华中师范大学出版社. [3] 钟扬, 张亮, 赵琼等, 2001. 简明生物信息学. 高等教育出版社. 译著 [1] M. Nei, S. Kumar著, 吕宝忠, 钟扬, 高莉萍等译, 2002. 分子进化与系统发育. 高等教育出版社. [2] D. W. Mount著, 钟扬, 王莉, 张亮等译, 2003. 生物信息学. 高等教育出版社. [3] J. D. Watson著, 钟扬, 沈玮, 赵琼, 王旭译, 2003. 基因, 女郎, 伽莫夫. 上海科技教育出版社. [4] P. Reilly著, 钟扬, 李作峰, 赵佳媛, 赵晓敏译, 2005. 林肯的DNA. 上海科技教育出版社