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哈尔滨医科大学生物信息科学与技术学院研究生导师简介-张瑞杰

哈尔滨医科大学 [db:出处]/2016-02-28

>教授 姓  名: 张瑞杰 部  门: 统计遗传学教研室 职  称: 教授、硕士生导师 学  历: 硕士研究生 职  务: 学院教学督导负责人、教研室主任 办公电话: 0451-86620941-126 办公地址: 分子生物学馆126室 Email: zhangruijie2002(at)yahoo.com.cn 主要研究方向: 统计遗传学 个人简介   张瑞杰,女,教授,统计遗传教研室主任,毕业于东北师范大学,硕士学历,硕士导师。目前共培养研究生17人,指导七年制、本科毕业设计40余人。研究方向为统计遗传学与生物信息学,多年来主要从事统计遗传学方法与生物信息学、系统生物学思想结合的系统遗传学方向方法与应用研究。主要集中于:(1)研究人类基因组的统计遗传特性,解析遗传多态与系统水平的群体差异,以寻找与群体分化相关联的功能基因集合或通路;(2)应用各种组学信息研究疾病及其相关的基因之间的关系;(3)基于序列结构信息的药物靶点预测研究。主持国家自然科学基金1项,主持黑龙江省自然科学基金项目3项,主持黑龙江省教育厅科学研究项目2项,开发复杂疾病相关单体型查询平台2项,类风湿性关节炎风险位点查询平台1项,申请软件著作权2项,已发表研究论文20余篇(SCI收录15篇,EI收录4篇)。论文发表在《Plos one》、《European Journal of Human Genetics》、《Journal of Theory Biology》、《International Journal of Immunogenetics》、《FEBS Journal》等杂志上。近五年主讲课程包括:《概率论与数理统计》,《统计遗传学与基因作图》等5门;共编写教材6部(主编2部,副主编2部),其中包括《概率论与信息论基础》(主编)、《医学信息分析方法》(副主编)等;主持校级精品课程建设《统计遗传与基因作图》一项。   主要承担的课题项目: 1. 主持国家自然科学基金项目:全基因组范围内的类风湿性关节炎风险因素挖掘技术研究,项目号:81172842; 2. 主持黑龙江省自然科学基金项目:利用生物信息融合技术整合多层次数据研究风湿性疾病遗传机制,项目号:C201206; 3. 主持黑龙江省自然科学基金项目:基于生物标记的复杂疾病多基因挖掘与定位生物信息融合方法研究,项目号:F200802; 4. 主持黑龙江省自然科学基金项目:基于基因表达谱特征基因识别新技术,项目号:F2004-02. 5. 主持黑龙江省教育厅科研项目:利用生物信息融合方法挖掘离子通道药物靶点,项目号:11531113. 6. 作为课题骨干人员参与国家973前期科研专项:复杂疾病靶基因功能识别与网络重建的系统生物信息融合方法研究: 7. 主持哈尔滨医科大学青年科学基金资助项目:疾病相关的离子通道靶点识别的生物信息平台建设。   主要获得的教学成果: 1. 医用高等数学,主编 李霞 张瑞杰,黑龙江科学技术出版社,2003.5 2. 概率论与信息论基础,主编 张瑞杰,哈尔滨出版社,2003.7 3. 医学信息分析方法,副主编 张瑞杰,哈尔滨出版社,2002.8 4. 医用高等数学习题集,主编 张瑞杰,黑龙江科学技术出版社,2003.5   主要发表的论文列表: 1. Ruijie Zhang*, Lian Duan, Yongshuai Jiang, Xuehong Zhang, Mingming Zhang, Guoping Tang. Association between IL7R T244I polymorphism and multiple sclerosis: a meta-analysis. Molecular Biology Reports, Mol Biol Rep 2011, 38(8):5079-5084. 2. Ruijie Zhang*, Peng Sun, Yongshuai Jiang, Zhiqiang Chen, Chen Huang, Xuehong Zhang, Ruimin Zhang. Genome-wide haplotype association analysis and gene prioritization identify CCL3 as a risk locus for rheumatoid arthritis. International Journal of Immunogenetics ,2010 37( 4):273–278. 3. Zhang Ruijie, Li Xia*, Jiang Yongshuai, Liu Guiyou, Li Chuanxing, Zhang Fan, Xiao Yun, Gong Binsheng. Novel strategies to mine alcoholism relevant SNP haplotype and gene by combining existing knowledge framework. Sci China Ser C-Life Sci 2009, 52(2):163-172. 4. Ruijie Zhang*, Jiang Yongshuai, Liu Guiyou, Xia Li, Li jin: A systematic method based on haplotype analysis: application to risk alleles and genes mining for RA. ICNC, vol. 5, pp.39-43, 2008. 5. RuijieZhang*, Yongshuai Jiang, Hongchao Lv, Xuehong Zhang, Peng Sun, Yan Zhang, Jin Li, Mingming Zhang, Zhenwei Shang, Xia Li. CDRH: A Database of Complex Disease-related Haplotypes in Human. Computational Molecular Biology, 2011, Vol.1, No.3, 12-19. 6. Yongshuai Jiang, Ruijie Zhang*, Jiajia Zheng, Panpan Liu§, Guoping Tang, Hongchao Lv, Lanying Zhang, Zhenwei Shang, Yuanbo Zhan, Wenhua Lv, Miao Shi, Ruimin Zhang. Meta-Analysis of 125 Rheumatoid Arthritis-Related Single Nucleotide Polymorphisms Studied in the Past Two Decades. PLoS ONE 2012, 7(12): e51571. 6. Sun P, Zhang R*, Jiang Y, Wang X, Li J, Lv H, Tang G, Guo X, Meng X, Zhang H, Zhang R. Assessing the patterns of linkage disequilibrium in genic regions of the human genome. FEBS J 2011, 278(19):3748-3755. 7. Yongshuai Jiang, Ruijie Zhang*, Peng Sun, Guoping Tang, Xuehong Zhang, Xing Wang, Xiaodan Guo, Qiuyu Wang, Xia Li*: Identifying Highly Conserved and Highly Differentiated Gene Ontology Categories in Human Populations. PLoS ONE, November 2011, Volume 6, Issue 11, e27871. 8. Xuehong Zhang, Ruijie Zhang*, Yongshuai Jiang, Peng Sun, Guoping Tang, Xing Wang, Hongchao Lv and Xia Li. The expanded human disease network combining protein-protein interaction information. European Journal of Human Genetics (2011) 19, 783-788. 9. Chen Huang, Ruijie Zhang*, Zhiqiang Chen, Yongshuai Jiang, Zhenwei Shang, Peng Sun, Xuehong Zhang, Xia Li*. Predict potential drug targets from the ion channel proteins based on SVM. Journal of Theoretical Biology, 2010 262(4): 750-756. 10. Hongchao Lv§, Yongshuai Jiang§, Jin Li, Mingming Zhang, Zhenwei Shang, Jiajia Zheng, Xin Wu, Panpan Liu, Ruijie Zhang*, Huimin Yu. Association between polymorphisms in the promoter region of interleukin-10 and susceptibility to inflammatory bowel disease. Mol Biol Rep, Epub ahead of print. (2014) 11. Yongshuai Jiang, Lanying Zhang, Fanwu Kong, Mingming Zhang, Hongchao L§, Guiyou Liu, Mingzhi Liao, Rennan Feng, Jin Li, Ruijie Zhang*. MCPerm: A Monte Carlo Permutation Method for Accurately Correcting the Multiple Testing in a Meta-Analysis of Genetic Association Studies. PLoS ONE 9(2): e89212. (2014) 12. Yongshuai Jiang, Ruijie Zhang*, Guiyou Liu, Zhen Wang, Zhi-qiang Chen, Peng Sun, Xuehong Zhang: Multifactor dimensionality reduction for detecting haplotype-haplotype interaction. 2009, Tianjin FSKD’ 09. 13. Li J, Wang L, Xu L, Zhang R*, Huang M, Wang K, Xu J, Lv H, Shang Z, Zhang M, Jiang Y, Guo M, Li X. DBGSA: a novel method of distance-based gene set analysis. J Hum Genet, 2012. 57(10): p. 642-53. 14. Guiyou Liu, Yongshuai Jiang, Ruijie Zhang*, Zhen Wang, Mingming Zhang, Ruimin Zhang, and Xia Li:A novel method to select high-risk disease-related regions after a genome wide haplotype-based association study: an application to Alcoholism. IEEE 2009, Tianjin ICNC ’09-FSKD’ 09. 15. Jiang Y, Zhang M, Guo X, Zhang R*. Enrichment Disequilibrium: a novel approach for measuring the degree of enrichment after gene enrichment test. Biochem Biophys Res Commun, 2012. 424(3): p. 563-7. 16. Li J, Zhang Y, Wang Y, Zhang C, Wang Q, Shi X, Li C, Zhang R*, Li X*. Functional combination strategy for prioritization of human miRNA target. Gene. 2014 Jan 1;533(1):132-41. 17. Jiang Y, Zhang R*, Lv H, Li J, Wang M, Chang Y, Lv W, Sheng X, Zhang J, Liu P, Zheng J, Shi M, Liu G. HGPGD: The Human Gene Population Genetic Difference Database. PLoS One, 2013. 8(5): p. e64150. 18. Yongshuai Jiang, Ruijie Zhang*, Guiyou Liu, Zhen Wang, Zhiqiang Chen, Peng Sun, Chen Huang, Xuehong Zhang. Multifactor Dimensionality Reduction for Detecting Haplotype - Haplotype Interaction. proceedings in FSKD (1): 241 - 245. 19. Jiang Y, Zhang R*, Zheng J, Liu P, Tang G, Lv H, Zhang L, Shang Z, Zhan Y, Lv W, Shi M, Zhang R. Meta-analysis of 125 rheumatoid arthritis-related single nucleotide polymorphisms studied in the past two decades. PLoS One. 2012;7(12):e51571. 20. Li J, Wang L, Xu L, Zhang R*, Huang M, Wang K, Xu J, Lv H, Shang Z, Zhang M, Jiang Y, Guo M, Li X*. DBGSA: a novel method of distance-based gene set analysis. J Hum Genet. 2012 Oct;57(10):642-53. 21. Liu G, Jiang Y, Chen X, Zhang R, Ma G, Feng R, Zhang L, Liao M, Miao Y, Chen Z, Zeng R, Li K. Measles contributes to rheumatoid arthritis: evidence from pathway and network analyses of genome-wide association studies. PLoS One. 2013 Oct 18;8(10):e75951. 22. Su J, Qi Y, Liu S, Wu X, Lv J, Liu H, Zhang R, Zhang Y. Revealing epigenetic patterns in gene regulation through integrative analysis of epigenetic interaction network.. Mol Biol Rep. 2012 Feb;39(2):1701-12. 23. Jian-YiYang, Zhen-LingPeng, Zu-GuoYu, RuiJieZhang, VoAnh, DeshengWang. Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation. J.Theor.Biol.(2009),doi:10.1016/j.jtbi.2008.12.027 24. 张瑞杰,李霞,姜永帅,刘桂友,李传星,张帆,肖云,宫滨生。结合已有知识体系的酒精中毒相关的SNP单体型及其相关基因挖掘 中国科学 C辑 生命科学 2008, 38(10):938-948 25. 张瑞杰,许杰,郭政,李霞,李康.利用基因表达谱对组织样品分类方法的研究,中国卫生统计,2003,20(1):2-5. 26. 张瑞杰,郭政,李霞,薛雅丽,傅松滨.主成分分析与聚类分析在民族分化研究中的应用,中国卫生统计,2002,19(4):201-203. 27. 张瑞杰,许杰,郭政,李霞.一种从微阵列中识别差异表达基因的得分算法及其界值确定方法,数理医药学杂志,2002,15(5):393-396. 28. 杨兴云,张瑞杰, 宫滨生,张世谦,李霞.心血管疾病遗传连锁分析及发病风险因子的研究,数理医药学杂志.2004.17(5):P.458-461. 29. 王海芸,李霞,郭政,张瑞杰.四种模式分类方法应用于基因表达谱分析的比较研究. 生物医学工程学杂志,2004. (EI)
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