基本信息
蔡云鹏男硕导中国科学院深圳先进技术研究院
电子邮件： yp.cai@siat.ac.cn
通信地址： 深圳市南山区大学城学苑大道1068号B-316
邮政编码： 518055
部门/实验室：数字所
招生信息
招生专业081203-计算机应用技术
083100-生物医学工程

招生方向生物信息学，模式识别与机器学习
健康信息学
生物医学大数据


教育背景2001-09--2007-01清华大学博士学位
1997-09--2001-07清华大学工学学士学位


工作经历
工作简历2011-06~现在,中国科学院深圳先进技术研究院,副研究员
2007-10~2011-04,美国佛罗里达大学,博士后


专利与奖励
奖励信息（1） 深圳市“孔雀人才”B类, , 市地级, 2013


出版信息
发表论文（1）ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time,PLOS Computational Biology,2017,通讯作者
（2）Multi-label Learning for Predicting the Activities of Antimicrobial Peptides,Scientific Reports,2017,通讯作者
（3）A survey on database resources for microRNA–disease relationships,Briefings in Functional Genomics,2016,通讯作者
（4）Obtaining Human Ischemic Stroke Gene Expression Biomarkers from Animal Models: A Cross-species Validation Study,Scientific Reports,2016,通讯作者
（5）Evolving-pattern analysis of transient and long-term biomarkers for cancers: Hepatocellular carcinoma as a case,Interdisciplinary Sciences: Computational Life Sciences,2015,通讯作者
（6）OVERSAMPLING METHOD FOR IMBALANCED CLASSIFICATION,COMPUTING AND INFORMATICS,2015,通讯作者
（7）Risk Prediction of One-Year Mortality in Patients with Cardiac Arrhythmias Using Random Survival Forest,Computational and mathematical methods in medicine,2015,第2作者
（8）Differential impacts of juvenile hormone, soldier head extract and alternate caste phenotypes on host and symbiont transcriptome composition in the gut of the termite Reticulitermes flavipes,BMC genomics,2013,第3作者
（9）The hindgut lumen prokaryotic microbiota of the termite Reticulitermes flavipes and its responses to dietary lignocellulose composition,Molecular ecology,2013,第2作者
（10）Comparative metatranscriptomic signatures of wood and paper feeding in the gut of the termite Reticulitermes flavipes (Isoptera: Rhinotermitidae),Insect Molecular Biology,2013,第3作者
（11）A Candidate Molecular Biomarker Panel for the Detection of Bladder Cancer,Cancer Epidemiology Biomarkers and Prevention,2012,第3作者
（12）A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis,Briefings in Bioinformatics,2012,第1作者
（13）Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences,The ISME Journal,2012,第2作者
（14）ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time,Nucleic acids research ,2011,第1作者
（15）Advanced computational algorithms for microbial community analysis using massive 16S rRNA sequence data,Nucleic acids research ,2010,第1作者
（16）Effective structure learning for EDA via L1-regularizedbayesian networks,Proceedings of the 12th annual conference on Genetic and evolutionary computation conference,2010,第3作者
（17）Fast Implementation of l1 Regularized Learning Algorithms Using Gradient Descent Methods,10th SIAM International Conference on Data Mining,2010,第1作者
（18）ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences,Nucleic acids research,2009,第1作者
（19）Duple-EDA and sample density balancing,Science in China: Series F,2009,第1作者
（20）Online Feature Selection Algorithm with Bayesian L1 Regularization,Advances in Knowledge Discovery and Data Mining,2009,第1作者
（21）Combining nomogram and microarray data for predicting prostate cancer recurrence,8th IEEE International Conference on BioInformatics and BioEngineering,2008,第2作者
（22）Semi-supervised feature selection under logistic I-RELIEF framework,19th International Conference on Pattern Recognition,2008,第2作者
（23）Cross entropy and adaptive variance scaling in continuous EDA,Proceedings of the 9th annual conference on Genetic and evolutionary computation conference,2007,第1作者
（24）Probabilistic modeling for continuous EDA with Boltzmann selection and Kullback-Leibeler divergence,Proceedings of the 8th annual conference on Genetic and evolutionary computation conference,2006,第1作者
（25）Global planning from local eyeshot: An implementation of observation-based plan coordination in robocup simulation games,Lecture Notes in Computer Science 2377,2002,第1作者
（26）

发表著作

科研活动
科研项目（ 1 ） 先进院择优中心资助, 参与,市地级,2012-01--2012-12
（ 2 ） 先进院低成本健康2012年重点突破经费/子课题, 主持,市地级,2012-01--2013-12
（ 3 ） 基于伪度量空间分割树的超高深度测序比对处理与定量基因组学分析, 主持,国家级,2013-01--2015-12
（ 4 ） 心脑血管疾病的异构数据整合性预警建模技术, 参与,省级,2013-01--2015-12
（ 5 ） 面向进化基因组学的高通量测序数据流形建模, 主持,国家级,2015-01--2018-12
（ 6 ） 穿戴式睡眠监测与夜间心脑血管事件预 警系统, 主持,省级,2016-01--2018-12
（ 7 ） 健康大数据分析技术工程实验室, 主持,省级,2016-01--2018-12
（ 8 ） 脑肿瘤网络登记平台的建立和维护, 主持,国家级,2015-01--2017-12
（ 9 ） 慢病运动康复服务系统在社区的示范应用, 主持,部委级,2016-01--2017-12