On January 22, 2020, China National Center for Bioinformation (CNCB) released the 2019 Novel Coronavirus Resource (2019nCoVR), an open-access information resource for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). 2019nCoVR features a comprehensive integration of sequence and clinical information for all publicly available SARS-CoV-2 isolates, which are manually curated with value-added annotations and quality evaluated by an automated in-house pipeline. Of particular note, 2019nCoVR offers systematic analyses to generate a dynamic landscape of SARS-CoV-2 genomic variations at a global scale. It provides all identified variants and their detailed statistics for each virus isolate, and congregates the quality score, functional annotation, and population frequency for each variant. Spatiotemporal change for each variant can be visualized and historical viral haplotype network maps for the course of the outbreak are also generated based on all complete and high-quality genomes available. Moreover, 2019nCoVR provides a full collection of SARS-CoV-2 relevant literature on the coronavirus disease 2019 (COVID-19), including published papers from PubMed as well as preprints from services such as bioRxiv and medRxiv through Europe PMC. Furthermore, by linking with relevant databases in CNCB, 2019nCoVR offers data submission services for raw sequence reads and assembled genomes, and data sharing with NCBI. Collectively, SARS-CoV-2 is updated daily to collect the latest information on genome sequences, variants, haplotypes, and literature for a timely reflection, making 2019nCoVR a valuable resource for the global research community. 2019nCoVR is accessible at https://bigd.big.ac.cn/ncov/.
PDF全文下载地址:
http://gpb.big.ac.cn/articles/download/827
删除或更新信息,请邮件至freekaoyan#163.com(#换成@)
The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR
本站小编 Free考研考试/2022-01-03
相关话题/gen
Pooled Plasmid Sequencing Reveals the Relationship Between Mobile Genetic Elements and Antimicrobial
Plasmidsremainimportantmicrobialcomponentsmediatingthehorizontalgenetransfer(HGT)anddisseminationofantimicrobialresistance.Tosystematicallyexplorether ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03SeSaMe PS Function: Functional Analysis of the Whole Metagenome Sequencing Data of the Arbuscular My
Inthisstudy,weintroduceanovelbioinformaticsprogram,Spore-associatedSymbioticMicrobesPosition-specificFunction(SeSaMePSFunction),forposition-specificfu ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03SeSaMe: Metagenome Sequence Classification of Arbuscular Mycorrhizal Fungi-associated Microorganisms
Arbuscularmycorrhizalfungi(AMF)areplantrootsymbiontsthatplaykeyrolesinplantgrowthandsoilfertility.Theyareobligatebiotrophicfungithatformcoenocyticmult ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03m6A Regulates Liver Metabolic Disorders and Hepatogenous Diabetes
N6-methyladenosine(m6A)isoneofthemostabundantmodificationsonmRNAsandplaysimportantrolesinvariousbiologicalprocesses.Theformationofm6Aiscatalyzedbyamet ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03Corrigendum to “Antibiotic Treatment Drives the Diversification of the Human Gut Resistome” [Genomic
PDF全文下载地址:/articles/download/818 ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03Tissue-specific Gene Expression Changes Are Associated with Aging in Mice
Agingisacomplexprocessthatcanbecharacterizedbyfunctionalandcognitivedeclineinanindividual.Agingcanbeassessedbasedonthefunctionalcapacityofvitalorgansa ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica
Asacarbon-storagecompoundandosmoprotectantinbrownalgae,mannitolissynthesizedandthenaccumulatedathighlevelsinSaccharinajaponica(Sja);however,theunderly ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03The Wolfiporia cocos Genome and Transcriptome Shed Light on the Formation of Its Edible and Medicina
Wolfiporiacocos(F.A.Wolf)hasbeenpraisedasafooddelicacyandmedicineforcenturiesinChina.Here,wepresentthegenomeandtranscriptomeoftheChinesestrainCGMCC5.7 ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evoluti
Chinesemittencrab(Eriocheirsinensis)isanimportantaquaculturespeciesinCrustacea.Functionalanalysis,althoughessential,hasbeenhinderedduetothelackofsuffi ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03mrMLM v4.0.2: An R Platform for Multi-locus Genome-wide Association Studies
Previousstudieshavereportedthatsomeimportantlociaremissedinsingle-locusgenome-wideassociationstudies(GWAS),especiallybecauseofthelargephenotypicerrori ...中科院北京基因组研究所 本站小编 Free考研考试 2022-01-03