姓名： 李晨虹 导师类别： 博导

所在专业： 海洋科学 研究方向： 鱼类分子系统学，环境DNA
学院/单位： 水产与生命学院
专业所属学院： 水产与生命学院
专业技术职务： 教授 行政职务： 水生生物系主任
性别： 男 E-Mail： chli@shou.edu.cn
最高学位： 博士
通讯地址： 实验室网页：http://www.lmse.org/index.html
备注：
简历

李晨虹，水产与生命学院教授，水生生物系主任。1989年至1996年在上海水产大学水生生物专业攻读本科、研究生，毕业后留校任教。2001年赴美留学，2007年获美国内布拉斯加大学博士学位。后在美国内布拉斯加大学、美国豪林斯海洋研究所做博士后研究，2012年回母校任教。他曾首创基因组序列比较法寻找系统进化分子标记，首次提出了用聚类分析的方法对DNA序列进行分组，解决了系统进化学数据分析的难题，在国际上引起广泛关注。2011年入选上海市“****”****，2012年获上海市“浦江人才”计划资助。

教育经历

2002/8 - 2007/7，美国内布拉斯加大学林肯分校，生物学，博士，导师：Guillermo Orti
2001/1 - 2002/7，美国佛罗里达理工学院，海洋生物，其他，导师：林俊达
1993/7 - 1996/7，上海水产大学，水产养殖，硕士，导师：李思发
1989/9 - 1993/6，上海水产大学，水生生物，学士

工作经历

2012/8 - 至今，上海海洋大学，水产与生命学院，教授
2010/8 - 2012/7，美国查尔斯顿学院，豪林斯海洋研究所，博士后
2007/8 - 2010/7，美国内布拉斯加大学林肯分校，生物系，博士后
1996/7 - 2000/12，上海水产大学，农业部水产增养殖生态生理重点实验室，助理研究员

研究成果

研究鱼类多位点分子系统学，取得如下成绩：①通过比较模式生物基因组，开发大量用于鱼类分子系统学的单拷贝核基因标记，获得广泛认可，并和国内外同行开展多方合作；②建立跨物种靶基因富集方法，低成本、高通量获取不同物种数千个目标基因序列，用于分子系统学和群体遗传学研究，被Biotechniques杂志评为2013年度精选文章；③应用上述方法研究海洋硬骨鱼及鲨鱼的分类和生物地理。在PNAS、Molecular Ecology Resource、Molecular Phylogenetics and Evolution 等行业一流期刊发表论文。和美国、英国、德国、挪威等多个国家的研究团队合作，研究成果产生了一定的国际影响。

获奖情况

项目名称 奖 项 等 次 排 名 角 色 时 间
从“吉富”到“新吉富”－尼罗罗非鱼种质创新与应用 上海市科技进步 一等奖 7 主要参加 2007-12
中华绒螯蟹种质研究与鉴定技术 上海市科技进步 二等奖 4 主要参加 2004-12
吉富品系尼罗罗非鱼的引进及其同现有养殖品系的评估 农业部科技进步 三等奖 6 主要参加 1997-11

专利著作

Ortí, G, Li, C. 2009. Phylogeny and Classification (Chapter 1). pp 1-24 in: Jamieson, B.G.M. (Eds.), Reproductive Biology and Phylogeny of Fishes. Science Publishers, Enfield, New Hampshire.
Ortí, G, Li, C., Farias, I. P. 2005. Filogenia, filogeografíay estructura poblacional de las especies de Prochilodus (Prochilodontidae, Characiformes) en las principales cuencas fluviales de Sudamérica. In: Renno J. -F., García-Dávila C., Duponchelle F. and Nuñez J. (Eds.), Biología de las Poblaciones de Peces de la Amazoníay Piscicultura. Comunicaciones del Primer coloquio de la Red de Investigación sobre la Ictiofauna Amazónica, Iquitos, Perú, pp. 116-122.

论文发表

1. Liang Lu, Jinliang Zhao and and Chenhong Li, 2020. High-quality genome assembly and annotation of the big-eye mandarin fish (Siniperca knerii). G3: Genes|Genomes|Genetics Early Online, published on January 17, 2020 as doi:10.1534/g3.119.400930
2. Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, and Chenhong Li, 2019. Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River. Ecology and Evolution, 2019;00:1–14.
3. Hao Yuan, Calder Atta, Luke Tornabene and Chenhong Li, 2019. Assexon: Assembling Exon Using Gene Capture Data. Evolutionary Bioinformatics, 15:1-13.
4. Guoxing Yin, Yiling Pan, Anirban Sarker, Mohammad A. Baki, Jin-Koo Kim, Hanlin Wu, Chenhong Li, 2019. Molecular systematics of Pampus (Perciformes: Stromateidae) based on thousands of nuclear loci using target-gene enrichment, Molecular Phylogenetics and Evolution, 140.
5. Jiamei Jiang, Hao Yuan, Xin Zheng, Qian Wang, Ting Kuang, Jingyan Li, Junning Liu, Shuli Song, Weicai Wang, Fangyuan Cheng, Hongjie Li, Junman Huang, Chenhong Li, 2019. Gene markers for exon capture and phylogenomics in rayfinned Fishes. Ecology and Evolution. 2019;1–11.
6. Robert S. Sommer, Michael Hofreiter, Frauke Kruger, Björn M. Siemers, Johanna L. A. Paijmans, Chenhong Li and Matthias F. Geiger, 2019. Preliminary results on the molecular study of fish-eating by ‘trawling Myotis’ bat species in Europe. Vertebrate Zoology, 69 (1): 83 – 92.
7. Yongtao Tang1, Chenhong Li1, Kunyuan Wanghe, Chenguang Feng, Chao Tong, Fei Tian, Kai Zhao, 2019. Convergent evolution misled taxonomy in schizothoracine fishes (Cypriniformes: Cyprinidae). Molecular Phylogenetics and Evolution, 134:323-337.
8. Nicolas Straube, Chenhong Li, Matthias Mertzen, Hao Yuan and Timo Moritz, 2018. A phylogenomic approach to reconstruct interrelationships of main clupeocephalan lineages with a critical discussion of morphological apomorphies. BMC Evolutionary Biology, 18:158.
9. Kuang T, L Tornabene, J Li, J Jiang, P Chakrabartye, J S Spark, G J.P. Naylor, C Li, 2018. Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness. Molecular Phylogenetics and Evolution, 128, 192-202.
10. Liu S, Wang C, Li C, 2018. Progress in Aquaculture Genetics and Breeding in China. Journal of World Aquaculture Society, 49 (2): 272-276.
11. Xia J, Wu H, Li C, Wu Y, Liu S, 2018. A new species of Rhinogobius (Pisces: Gobiidae), with analyses of its DNA barcode. Zootaxa 4407 (4): 553-562.
12. L C. Hughes, G Ortí, Y Huang, Y Sun, C C. Baldwin, A W. Thompson, D Arcila, R Betancur-R, C Li, L Becker, N Bellora, X Zhao, X Li, M W, C Fang, B Xie, Z Zhou, H Huang, S Chen, B Venkatesh, and Q Shi, 2018. Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proceedings of the National Academy of Sciences of the United States of America, 115(24): 6249-6254. doi:10.1073/pnas.
13. Li H, Y. He, J. Jiang, Z. Liu, C. Li, 2018. Molecular systematics and phylogenetic analysis of the Asian endemic freshwater sleepers (Gobiiformes: Odontobutidae). Molecular Phylogenetics and Evolution, 121, 1–11. IF= 4.419
14. Liu J, Jiang J, Song S, Tornabene, L., Chabarria, R., Naylor, G. J. P., Li, C., 2017. Multilocus DNA barcoding - Species Identification with Multilocus Data. Scientific Reports 7, 16601. IF= 4.259
15. Song, S., Zhao, J., Li, C., 2017. Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences. Molecular Phylogenetics and Evolution, 111, 44-55. IF= 4.419
16. Corrigan, S., Maisano Delser, P., Eddy, C., Duffy, C., Yang, L., Li, C., Bazinet, A.L., Mona, S., Naylor, G.J., 2017. Historical introgression drives pervasive mitochondrial admixture between two species of pelagic sharks. Molecular Phylogenetics and Evolution, 110, 122-126.
17. Wang, Q., Zhang, J., Matsumoto, H., Kim, J., Li, C. 2016. Population structure of elongate ilisha Ilisha elongata along the Northwestern Pacific Coast revealed by mitochondrial control region sequences. Fisheries Science, 82 (5): 771 - 785. doi:10.1007/s12562-016-1018-4. IF= 0.839
18. Yuan H, Jiang J, Jimenez FA, Hoberg EP, Cook JA, Galbreath KE, Li C. 2016. Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms. Molecular Ecology Resources, 16(5):1095-1106. doi: 10.1111/1755-0998.12532. IF= 7.332
19. PM Delser, Corrigan S., Hale M., Li C., Veuille M., Planes S., Naylor G., Mona S. 2016. Population genomics of C. melanopterus using target gene capture data: demographic inferences and conservation perspectives. Scientific Reports, (6): 33753. doi: 10.1038/srep33753
20. Chenhong Li, Shannon Corrigan , Lei Yang , Nicolas Straube , Mark Harris , Michael Hofreiter , William T. White , Gavin Naylor, 2015. DNA Capture Reveals Trans Oceanic Gene Flow in Endangered River Sharks. Proceedings of the National Academy of Sciences of the United States of America, 112 (43): 13302–13307. www.pnas.org/cgi/doi/10.1073/pnas.. IF= 9.423
21. Nicolas Straube, Chenhong Li, Julien M. Claes, Shannon Corrigan and Gavin J. P. Naylor, 2015. Molecular phylogeny of Squaliformes and first occurrence of bioluminescence in sharks. BMC: Evolutionary Biology, 15:162. DOI 10.1186/s12862-015-0446-6.
22. Nicolas Straube, William T. White, Hsuan-Ching Ho, Elisabeth Rochel, Shannon Corrigan, Chenhong Li, Gavin J.P. Naylor, 2014. A DNA sequence-based identification checklist for Taiwanese chondrichthyans. Zootaxa, 12/2013; 3752(1): 256-278.
23. H Ma, C Ma, C Li, J Lu, X Zou, Y Gong, W Wang, W Chen, L Ma, L Xia. 2015. First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics. Scientific Reports, (5), 11524.
24. Nicolas Straube, Robin W. Leslie, Paul J. Clerkin, David A. Ebert, Elisabeth Rochel, Shannon Corrigan, Chenhong Li, Gavin J.P. Naylor, 2014. On the occurrence of the southern Lanternshark, Etmopterus granulosus, off south Africa, with comments on the validity of E. compagnoi. Deep Sea Research Part II Topical Studies in Oceanography. DOI: 10.1016/j.dsr2.2014.04.004
25. X. Yao, C. Li, C. W. Dick, 2013. Exon-primed intron-crossing (EPIC) markers for evolutionary studies of Ficus and other taxa in the fig family (Moraceae). Applications in Plant Sciences, 1 (10 ): **.
26. P. R. Ströher, C. Li and M. R. Pie, 2013. Exon-primed intron-crossing (EPIC) makers as a tool for ant Phylogeography, Revista Brasileira de Entomologia, AHEAD.
27. Li, C., M., Hofreiter, N., Straube, S., Corrigan, G. J. P. Naylor, 2013. Capturing protein-coding genes across highly divergent species. BioTechniques 54:321-326. IF= 2.754 IF= 2.754
28. Betancur-R. R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton II JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G., 2013. The Tree of Life and a New Classification of Bony Fishes. PLOS Currents Tree of Life. 2013 Apr 18.
29. Broughton RE, Betancur-R. R, Li C, Arratia G, Ortí G. Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution. PLOS Currents Tree of Life. 2013 Apr 16.
30. Betancur-R., R., C. Li, T. A Munroe, J. A. Ballesteros, G. Ortí. 2013. Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes). Systematic Biology 62 (5): 763-785.
31. Li, C., Riethoven, J.-J. M., Naylor, G. 2012. EvolMarkers: a database for mining exon and intron markers for evolution, ecology and conservation studies. Molecular Ecology Resources, 12(5):967-71. IF= 7.432
32. Li, C., Matthes, K., Garcia, M., Naylor, G. J. P. 2012. Nuclear markers for phylogenetics of chondrichthyes and the problem in rooting phylogeny with distant outgroup. Molecular Phylogenetics and Evolution, 63:365-373. IF= 4.066
33. Sommer, J. A., Li, C., Brozek, J., Bessert, M. L., Ortí, G., Berra, T. M., 2011. Low genetic diversity in Nurseryfish, Kurtus gulliveri (Perciformes: Kurtidae), and an appraisal of its breeding system using microsatellite loci. The Beagle, Records of the Museums and Art Galleries of the Northern Territory, 2011 27: 179-188.
34. Li, C., Betancur-R, R., Smith, Wm. L., Ortí, G. 2011. Monophyly and interrelationships of Snook and Barramundi (Centropomidae sensu Greenwood) and five new markers for fish phylogenetics. Molecular Phylogenetics and Evolution, 60: 463-471.
35. Li, C., Ortí, G., Zhao, J., 2010. The phylogenetic placement of sinipercid fishes (“Perciformes”) revealed by 11 nuclear loci. Molecular Phylogenetics and Evolution, 56: 1096-1104.
36. Li, C., Riethoven, J.-J. M., Ma, L., 2010. Exon-primed intron-crossing (EPIC) markers for non-model teleost fishes. BMC: Evolutionary Biology, 10: 90.
37. Li, C., Bessert, M. L., Macrander, J., Ortí, G., 2009. Low variation but strong population structure in mitochondrial control region of the plains topminnow, Fundulus sciadicus. Journal of Fish Biology, 74: 1037-1048.
38. Li, C., Lu, G., Ortí, G., 2008. Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Systematic Biology, 57(4): 519-539.
39. Wang, C., Li, C., Li, S., 2008. Mitochondrial DNA-inferred population structure and demographic history of the mitten crab (Eriocheir, sensu stricto) along the coast of mainland China inferred from mitochondrial loci. Molecular Ecology, 17: 3515-3527.
40. Zhao, J., Li, C., Zhao, L., Wang, W., Cao, Y., 2008. Mitochondrial diversity and phylogeography of the Chinese perch, Siniperca chuatsi (Perciformes: Sinipercidae). Molecular Phylogenetics and Evolution, 49(1): 399-404.
41. Li, C., Ortí, G., Zhang, G., Lu, G., 2007. A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study. BMC: Evolutionary Biology, 7: 44.
42. Li, C., Ortí, G., 2007. Molecular phylogeny of Clupeiformes (Actinopterygii) inferred from nuclear and mitochondrial DNA sequences, Molecular Phylogenetics and Evolution 44: 386-398.
43. Li, C., Bessert, M. L., Macrander, J., Ortí, G., 2007. Microsatellite loci for the plains topminnow (Fundulus sciadicus, Fundulidae). Molecular Ecology Notes 7: 691-693.
44. Li, C., Li, S., 2003. Genetically improved farmed nile tilapia and its new selected generation in China. In: Proceedings of the Third World Fisheries Congress: Feeding the World with Fish in the Next Millennium--The Balance between Production and Environment. American Fisheries Society Symposium 38.
45. Li, S., Li, C., Dey, M., Gagalacb, F., Dunham, R., 2002. Cold tolerance of three strains of Nile tilapia, Oreochromis niloticus, in China. Aquaculture 213: 123-129.
46. Li, C., Li, S., Xing, Y., Hu, B., Zhao, S., Wu, Z., 2001. Evaluation of culture performances of two crab Eriocheir sinensis populations in China. World Aquaculture Magazine, 32(3): 15-16, 68-69.
47. Li, S., Li, C., Dey, M., Dunham, R., 1999. Seinability of four strains of Nile tilapia, Oreochromis niloticus, in Chinese ponds. Aquaculture, 174: 223-227.
Publications in Chinese with English abstracts
48. Li, C., Li, S., Xing, Y., Hu, B., Zhao, S., Wu, Z., 2001. Growth and survival variations and their genotype environment interaction analysis of pond cultured two-year old Chinese mitten crabs, Eriocheir sinensis from Yangtze River and Liaohe River. ACTA Hydrobiologica Sinica, 26 (4): 335-341.
49. Wang, C., Li, S., Li, C., Zhao, J., 2001. Observation and analysis on appearing difference of precocious crab of Yangtze population and Liaohe population cultured in ponds. Journal of Lake Sciences, 13 (1): 57-62.
50. Li, Y., Li, S., Wang, C., Li, C., Zhao, J., 2001. Establishment and application of morphological discrimination model for juveniles Eriocheir sinensis from Liaohe, Yangtze and Oujiang rivers. Journal of Fisheries of China, 25 (2): 120-126.
51. Zhu, Z., Li, S., Li, C., Han, F., Zhou, P., Jia, J., Ji, Y., 2000. Study on male rate, growth rate and early survival rate of hybrids [Oreochromis niloticus X O. aureus] from different parental combinations. Fisheries Science & Technology, 27(2): 54-58.
52. Li, S., Cai, W., Zuo, S., Li, C., Zhao, J., Wang, C., Chen, G., 2000. Quality analysis of Chinese mitten crab Eriocheir sinensis in Yangchenghu Lake. Journal of Fishery Sciences of China, 7 (3): 71-74.
53. Wang, C., Li, S., Li, C., Zhao, J., 2000. Comparison on survival rate and growth of juvenile crab of Yangtze population and Liaohe population. Journal of Shanghai Fisheries University, 9(2): 111-115.
54. Li, C., Li, S., 1999. Phylogenesis of populations of mitten crabs (Eriocheir sinensis, Eriocheir japonicus) in six river systems of Mainland China: morphology discriminant analysis. Journal of Fisheries of China, 23 (4): 337–342.
55. Li, J., Li, C., Li, S., 1999. The differences of color morphology in Taiwan red tilapia. Journal of Shanghai Fisheries University, 8(2): 179-184.
56. Li, C., Wang, C., Li, S., 1998. Discriminant analysis of precocious mitten crabs in early stage using morphological characters. Fisheries Science & Technology Information, 25(2): 73-76.
57. Li, S., Li, C., Li, J., 1998. Analysis of morphological variations among strains of nile tilapia (Oreochromis niloticus). Acta Zoologica Sinica, 44(4): 450-457.
58. Li, S., Li, C., Li, J., Han, F., Ye, W., Chen, P., Zhou, Z., 1998. On-station evaluation of growing performance of five strains of nile tilapia. Journal of Fisheries of China, 22(4): 314-321.
59. Yang, P., Li, C., 1998. Molting and growth of Chinese mitten crab Eriocheir sinensis, raised in plastics cage. Journal of Shanghai Fisheries University, 7(1): 159-162.
60. Li, C., Li, S., 1997. The difference in seinability of nile tilapia. Fisheries Science & Technology Information, 24(3):108-109, 11.
61. Li, S., Lu, G., Li, C., Ma, D., Lin, Z., Hu, G., 1997. MtDNA polymorphism analysis of local populations of soft-shelled turtle from east China. Journal of Fishery Sciences of China, 4(3): 1-6.
62. Zhao, J., Li, S., Li, C., Li, J., 1997. Study of Biochemical genetic marker of different strains of nile tilapia, Oreochromis niloticus. Journal of Shanghai Fisheries University, 6(3): 166-171.
63. Li, S., Li, J., Li, C., Han, F., Ye, W., Chen, P., 1997. On-farm evaluation of GIFT strain of nile tilapia. Fisheries Science & Technology Information, 24(6): 257-262.
64. Li, J., Li, C., Li, S., 1997. Growth performance among different hybrids between Oreochromis niloticus and O. aureus. Journal of Shanghai Fisheries University, 6(3): 166-171.
65. Li, S., Li, C., Lu, G., Li, Y., Ma, D., Lin, Z., Hu, G., 1997. Morphological variation in local populations of soft-shelled turtle from east China. Journal of Fishery Sciences of China, 4(5): 1-6.
66. Li, C., Li, S., 1996. Study on low lethal temperature of different strains of nile tilapia (Oreochromis niloticus). Fisheries Science & Technology Information, 23(5): 195-198.