曹沁教授
研究助理教授电话:3943 6805
电邮:Email住址会使用灌水程式保护机制。你需要启动Javascript才能观看它
地址:522A, Lo Kwee-Seong Integrated Biomedical Sciences Building, Area 39, CUHK
Publons:https://publons.com/researcher/3963428/qin-cao/
ORCID:https://orcid.org/0000-0002-3106-562X
个人简介Prof. CAO Qin (曹沁) completed her B.Eng. in Computer Science and Technology from Wuhan University, and her Ph.D. in Computer Science and Engineering (CSE) from The Chinese University of Hong Kong (CUHK). She then continued her postdoctoral research at School of Biomedical Sciences (SBS) and CSE in CUHK for three years and became a Research Assistant Professor in 2020. Her research areas are Bioinformatics and Computational Biology. Prof. Cao has received awards including Young Scholars Thesis Award from CUHK, Young Scientist Award 2nd Runner-up from Hong Kong Institution of Science and Top-10 paper in 2016-17 at RECOMB/ISCB Regulatory Systems Genomics. She has published papers in international journals including Nature Genetics, Nature Machine Intelligence, Nature Communications, Cell Reports, Briefings in Bioinformatics and BMC Genomics.
研究兴趣
着作选录
研究资助
Reconstruction of gene regulatory networks.
Analysis of multi-omics data and 3D genome structures.
Development of bioinformatics algorithms, pipelines and tools.
Jiang, Q.#, Ang, J. Y.#, Lee, A. Y., Cao, Q., Li, K. Y., Yip, K. Y., & Leung, D. C. (2020). G9a Plays Distinct Roles in Maintaining DNA Methylation, Retrotransposon Silencing, and Chromatin Looping. Cell Reports, 33(4), 108315.
Cao, Q.#, Zhang, Z.#, Fu, A.X., Wu, Q., Lee, T.L., Lo, E., Cheng, A.S.L., Cheng, C., Leung, D., & Yip, K.Y. (2020). A unified framework for integrative study of heterogeneous gene regulatory mechanisms. Nature Machine Intelligence, 2(8), 447-456.
Ho, E.Y.K.#, Cao, Q.#, Gu, M., Chan, R.W.L, Wu, Q., Gerstein, M., & Yip, K.Y. (2020). Shaping the nebulous enhancer in the era of high-throughput assays and genome editing. Briefings in Bioinformatics, 21(3), 836-850.
Zhang, J. #, Lee, D. #, Dhiman, V. #, Jiang, P. #, Xu, J., McGillivray, P., Yang, H., Liu, J., Meyerson, W., Clarke, D., Gu, M., Li, S., Lou, S., Xu, J., Lochovsky, L., Ung, M., Ma, L., Yu, S., Cao, Q., Harmanci, A., Yan, K.K., Sethi, A., Gürsoy, G., Schoenberg, M.R., Rozowsky, J., Warrell, J., Emani, P., Yang, Y.T., Galeev, T., Kong, X., Liu, S., Li, X., Krishnan, J., Feng, Y., Rivera-Mulia, J.C., Adrian, J., Broach, J.R., Bolt, M., Moran, J., Fitzgerald, D., Dileep, V., Liu, T., Mei, S., Sasaki, T., Trevilla-Garcia, C., Wang, S., Wang, Y., Zang, C., Wang, D., Klein, R.J., Snyder, M., Gilbert, D.M., Yip, K., Cheng, C., Yue, F.*, Liu, X.S.*, White, K.P.*, & Gerstein, M.* (2020). An integrative ENCODE resource for cancer genomics. Nature Communications, 11(1), 1-11.
Qian, Y., Liao, J., Suen, A.H.C., Lee, A.W.T., Chung, H.S., Tang, N.L.S., Chow, K.L., Cao, Q., Yip, K.L., Leung, T.Y., Chan, W.Y., Chan, D.Y.L., Li, T.C., & Lee, T.L. (2019). Comparative analysis of single-cell parallel sequencing approaches in oocyte application. The International Journal of Biochemistry and Cell Biology, 107, 1-5.
Cao, Q., Anyansi, C., Hu, X., Xu, L., Xiong, L., Tang, W., Mok, M.T.S., Cheng, C., Fan, X., Gerstein, M., Cheng, A.S.L., & Yip, K.Y. (2017). Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines. Nature Genetics, 49, 1428-1436.
Cao, Q., & Yip, K.Y. (2016). A survey on computational methods for enhancer and enhancer target predictions. Computational biology and bioinformatics: Gene regulation, 3-27.
Ho, E.D., Cao, Q., Lee, S.D., & Yip, K.Y. (2014). VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants. BMC Genomics, 15(1), 886.
#Co-first author
*Co-corresponding author
NSFC Youth Program [PI 1-Jan-22– 31-Dec-24]. “Refining computational predictions of multiscale 3D genome structures in a large number of cancer samples” (HK$ 288,950).