基本信息

姓名: 袁道军 出生年月: 1979.7

性别: 男 硕/博导： 硕导


民族: 汉族 开设课程： 生物信息学、植物大数据

职称: 副教授 研究方向： 基因组与作物驯化

学位: 农学博士

联系方式

办公电话：**
电子邮件：robert at mail.hzau.edu.cn
办公地址：二综C409

个人简介

袁道军，男，博士，植物科学技术学院副教授，硕士生导师，主讲《生物信息学》、《植物大数据》和《植物基因组研究进展》等课程。分别于2002年、2005年和2014年于华中农业大学依次获得农学和工学（计算机科学与技术）学士、理学硕士和农学博士学位。2015年4月至2018年8月，先后在美国杨百翰大学（Brigham Young University, Provo, UT）Joshua Udall副教授和爱荷华州立大学（Iowa State University, Ames, IA）Jonathan Wendel教授指导下开展博士后研究，期间前往美国农业部南方平原研究中心（USDA-ARS, College Station, TX）、北卡罗莱纳州立大学（North Carolina State University, Raleigh, NC）和康奈尔大学（Cornel University, Ithaca, NY）等开展合作研究。长期从事棉花基因组及生物信息学方面工作，利用组学大数据，开展棉花的比较基因组学研究，揭示棉花基因组进化与驯化的奥秘。先后主持自然科学基金、国家重大专项子课题和中央高校基本科研业务费项目各1项，参与多项国家自然科学基金以及美国国家自然科学基金重点项目。近些年来以第一作者、通讯作者和共同作者在Nature Genetics、Advanced Science、Nature Communication、Nucleic Acids Research、Plant Biotechnology Journal和Scientific Reports等学术杂志上发表论文30余篇，总引用次数2000余次，H指数21，I10指数24，详情请见Google Scholar链接 https://scholar.lanfanshu.cn/citations?hl=zh-CN&user=BjD0NDYAAAAJ&view_op=list_works&sortby=pubdate 或 https://orcid.org/0000-0001-6007-5571 。

科研项目

1. 农业农村部，国家重大科技专项，课题编号：2018ZX08010-05B, 项目年限：2018-2019（子课题主持）
2. 科技部，国家自然科学基金，课题编号：**，项目年限：2013-2015（主持）
3. 教育部，中央高校基本科研项目，课题编号：2013JC011，项目年限：2013-2014（主持）

教学研究与教学改革
1. 2020年校级教改项目：《生物信息学》课程思政（主持）
2. 2019年校级教改项目：现代农业气象多功能网络教学平台的研制（参与）
3. 2013年湖北省教学研究项目：以科研团队支撑农学类专业本科生综合创新实验教学的探索与实践（参与）

发明专利及获奖情况

发明专利：
1.朱龙付，高巍，龙璐，张献龙，聂以春，袁道军.棉花硬脂酰去饱和化酶GbSSI2基因及应用.专利授权号：ZL9.5
2.张献龙，李阳，涂礼莉，袁道军. 棉花细胞壁伸展蛋白基因GbEXPATR 及应用，专利授权号：ZL0.2
软件著作权：
1.袁道军, 陈进炜，高文辉. 基于参照物法的叶面积计算机测量系统【简称：Leaf】V1.0
2.袁道军，高文辉，王茂军. 基于相似性比较基因组学分析及结果展示工具相似性几何体软件【简称：SimiTriX-SimiQuad】V1.0
主要奖励：
1.2020年湖北省自然科学奖一等奖. 张献龙，王茂军，涂礼莉，林忠旭，袁道军. 棉花纤维发育与品质形成生物学.
2.第九届青年教师讲课竞赛优胜奖（2009年）
3.招生宣传先进个人（2007年、2008年）
4.优秀班主任（2006—2007学年度）
5.教学质量三等奖（2006年度）
6.华中农业大学教学成果二等奖（2004年，农业气象学辅助教学多功能网站的研制与应用）

发表的论文及著作

学术论文与著作（*表示通讯作者，#表示共同作者）：
学术论文
1. Grover CE, Pan M, Yuan D, Arick MA, Hu G, Brase L, Stelly DM, Lu Z, Schmitz RJ, Peterson DG: The Gossypium longicalyx genome as a resource for cotton breeding and evolution. G3: Genes, Genomes, Genetics 2020, 10(5):1457-1467. https://www.g3journal.org/content/10/5/1457
2. Grover CE, Yoo M-J, Lin M, Murphy MD, Harker DB, Byers RL, Lipka AE, Hu G, Yuan D, Conover JL: Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.). G3: Genes, Genomes, Genetics 2020, 10(2):731-754. https://www.g3journal.org/content/10/2/731
3. Li B, Liang S, Alariqi M, Wang F, Wang G, Wang Q, Xu Z, Yu L, Zafar MN, Sun L: The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol‐free cotton. Plant Biotechnology Journal 2020. https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13470
4. Bao Y, Hu G, Grover CE, Conover J, Yuan D, Wendel JF: Unraveling cis and trans regulatory evolution during cotton domestication. Nature Communications 2019, 10(1):5399. https://www.nature.com/articles/s41467-019-13386-w
5. Hu L, Xu Z, Wang M, Fan R, Yuan D, Wu B, Wu H, Qin X, Yan L, Tan L, Sim S, Li W, Saski CA, Daniell H, Wendel JF, Lindsey K, Zhang X, Hao C, Jin S: The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis. Nature Communications 2019, 10(1):4702. https://www.nature.com/articles/s41467-019-12607-6
6. Li B, Rui HP, Li YJ, Wang QQ, Alariqi M, Qin L, Sun L, Ding X, Wang FQ, Zou JW, Wang YQ, Yuan DJ, Zhang XL, Jin SX: Robust CRISPR/Cpf1 (Cas12a)-mediated genome editing in allotetraploid cotton (Gossypium hirsutum). Plant Biotechnology Journal 2019, 17(10):1862-1864. https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13147
7. Udall JA, Long E, Hanson C, Yuan D, Ramaraj T, Conover JL, Gong L, Arick MA, Grover CE, Peterson DG, Wendel JF: De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri. G3-Genes Genomes Genetics 2019, 9(10):3079-3085. https://www.g3journal.org/content/9/10/3079/
8. Udall JA, Long E, Ramaraj T, Conover JL, Yuan D, Grover CE, Gong L, Arick MA, 2nd, Masonbrink RE, Peterson DG, Wendel JF: The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants. Frontiers in plant science 2019, 10:1541-1541. https://www.frontiersin.org/articles/10.3389/fpls.2019.01541/
9. Wang M(#), Tu L(#), Yuan D(#), Zhu D, Shen C, Li J, Liu F, Pei L, Wang P, Zhao G: Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature genetics 2019, 51(2):224–229. https://www.nature.com/articles/s41588-018-0282-x
10. Wang M, Tu L, Lin M, Lin Z, Wang P, Yang Q, Ye Z, Shen C, Li J, Zhang L: Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication. Nature genetics 2017, 49(4):579–587. https://www.ncbi.nlm.nih.gov/pubmed/**
11. Li Y, Tu L, Pettolino FA, Ji S, Hao J, Yuan D, Deng F, Tan J, Hu H, Wang Q: GbEXPATR, a species‐specific expansin, enhances cotton fibre elongation through cell wall restructuring. Plant biotechnology journal 2016, 14(3):951-963. https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.12450
12. Wang M, Wang P, Tu L, Zhu S, Zhang L, Li Z, Zhang Q, Yuan D, Zhang X: Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation. Nucleic acids research 2016, 44(9):4067-4079. https://www.ncbi.nlm.nih.gov/pubmed/**
13. Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X: Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). New Phytologist 2015, 207(4):1181-1197. https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.13429
14. Wu Y, Min L, Wu Z, Yang L, Zhu L, Yang X, Yuan D, Guo X, Zhang X: Defective pollen wall contributes to male sterility in the male sterile line 1355A of cotton. Scientific reports 2015, 5:9608. https://www.ncbi.nlm.nih.gov/pubmed/**
15. Yuan D(#), Tang Z(#), Wang M(#), Gao W, Tu L, Jin X, Chen L, He Y, Zhang L, Zhu L: The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres. Scientific reports 2015, 5:17662. https://www.nature.com/articles/srep17662
16. Jin F, Hu L, Yuan D, Xu J, Gao W, He L, Yang X, Zhang X: Comparative transcriptome analysis between somatic embryos (SE s) and zygotic embryos in cotton: evidence for stress response functions in SE development. Plant biotechnology journal 2014, 12(2):161-173. https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.12123
17. Liu C, Yuan D, Lin Z: Construction of an EST-SSR-based interspecific transcriptome linkage map of fibre development in cotton. Journal of genetics 2014, 93(3):689-697. https://www.ncbi.nlm.nih.gov/pubmed/**
18. Sun L, Zhu L, Xu L, Yuan D, Min L, Zhang X: Cotton cytochrome P450 CYP82D regulates systemic cell death by modulating the octadecanoid pathway. Nature communications 2014, 5:5372. https://www.nature.com/articles/ncomms6372
19. Xu L, Zhang W, He X, Liu M, Zhang K, Shaban M, Sun L, Zhu J, Luo Y, Yuan D: Functional characterization of cotton genes responsive to Verticillium dahliae through bioinformatics and reverse genetics strategies. Journal of experimental botany 2014, 65(22):6679-6692.
20. Li X, Yuan D, Zhang J, Lin Z, Zhang X: Genetic mapping and characteristics of genes specifically or preferentially expressed during fiber development in cotton. PLoS One 2013, 8(1):e54444. https://www.ncbi.nlm.nih.gov/pubmed/**
21. Liu C, Yuan D, Zhang X, Lin Z: Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP. Journal of genetics 2013, 92(2):175-181. https://pubmed.ncbi.nlm.nih.gov/**/
22. Min L, Zhu L, Tu L, Deng F, Yuan D, Zhang X: Cotton GhCKI disrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase. The Plant Journal 2013, 75(5):823-835. https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.12245/
23. Wang M, Yuan D(*), Gao W, Li Y, Tan J, Zhang X(*): A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls. PLoS One 2013, 8(8):e72082. https://www.ncbi.nlm.nih.gov/pubmed/**
24. Xia J, Zhang X, Yuan D, Chen L, Webster J, Fang AC: Gene prioritization of resistant rice gene against Xanthomas oryzae pv. oryzae by using text mining technologies. BioMed research international 2013, 2013. https://www.hindawi.com/journals/bmri/2013/853043/
25. Yang X, Wang L, Yuan D, Lindsey K, Zhang X: Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. Journal of experimental botany 2013, 64(6):1521-1536. https://www.ncbi.nlm.nih.gov/pubmed/**
26. Li X, Yuan D, Wang H, Chen X, Wang B, Lin Z, Zhang X: Increasing cotton genome coverage with polymorphic SSRs as revealed by SSCP. Genome 2012, 55(6):459-470. https://cdnsciencepub.com/doi/full/10.1139/g2012-032/
27. Yang X, Zhang X, Yuan D, Jin F, Zhang Y, Xu J: Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton. BMC plant biology 2012, 12(1):110. https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-12-110
28. Yuan D, Liang S, Lin Z, Zhang X: In silico comparative analysis of EST-SSRs in three cotton genomes. African Journal of Biotechnology 2012, 11(69):13269-13371.
29. Hu L, Yang X, Yuan D, Zeng F, Zhang X: GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton. Plant biotechnology journal 2011, 9(9):1038-1048. https://onlinelibrary.wiley.com/doi/full/10.1111/j.1467-7652.2011.00617.x
30. Xu L, Zhu L, Tu L, Liu L, Yuan D, Jin L, Long L, Zhang X: Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. Journal of experimental botany 2011, 62(15):5607-5621. https://academic.oup.com/jxb/article/62/15/5607/561887
31. Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X: Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC 1 population between Gossypium hirsutum and G. barbadense. BMC genomics 2011, 12(1):15. https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-12-15
32. Yuan D, Tu L, Zhang X: Generation, annotation and analysis of first large-scale expressed sequence tags from developing fiber of Gossypium barbadense L. PLoS One 2011, 6(7):e22758. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.**
33. ZHU L-f, HE X, YUAN D-j, XU L, XU L, TU L-l, SHEN G-x, ZHANG H, ZHANG X-l: Genome-Wide Identification of Genes Responsive to ABA and Cold/Salt Stresses in Gossypium hirsutum by Data-Mining and Expression Pattern Analysis. Agricultural Sciences in China 2011, 10(4):499-508. https://www.sciencedirect.com/science/article/pii/S**00308
34. Lin Z, Yuan D, Zhang X: Mapped SSR markers unevenly distributed on the cotton chromosomes. Frontiers of Agriculture in China 2010, 4(3):257-264. https://www.sciencedirect.com/science/article/pii/S**00308
35. Daojun Y, AnGuo L, BaoZhong Y, LiYong H, ZhiXiong L, FangFang Z: Nutrition information extraction of rape canopy based on computer-vision technology. Transactions of the Chinese Society of Agricultural Engineering 2009, 25(12):174-179.
36. LIU Z-x, LIU A-g, YUAN D-j: Design and development of B/S Model-based Climate Information System. Agriculture Network Information 2008(12):13.
37. YUAN D-j, LIU A-g, LIU Z-x, ZHANG F-f: Application and expectation of computer-vision to plant. Agriculture Network Information 2007, 2:21-25.
教材与著作
1. Maojun Wang, Daojun Yuan, Xianlong Zhang. Genome Sequencing, In: Cotton, 2nd edition, edited by David Fang and Richard G. Percy, published by American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, 2015, P289-302.S
2. 《农学概论》参编，2009，中国矿业大学出版社.