姓名

周超

联系电话

电子邮箱

zhouchao@ctgu.edu.cn

招收专业

生物学（学硕）、生物与医药（专硕），计算机科学科学与技术（学硕）

研究方向

生物信息学，表观遗传学

个人简介

周超，男，博士，教授，硕士生导师。湖北省人才工程入选者，三峡大学“三峡学者”，湖北省博士服务团成员，湖北省生物信息学会理事，湖北省药理学会中药药理专业委员会委员，中药材信息化育种宜昌市重点实验室负责人，五峰博翎种业有限公司“科技副总”。2018年博士毕业于华中农业大学作物遗传改良全国重点实验室，同年受聘于三峡大学全职工作。一直从事植物生物信息学和表观遗传学的研究，相关成果发表SCI论文30余篇，以第一作者或通讯作者在Nature Plants，Nucleic Acids Research，Plant   Physiology，Plant communications等国际著名刊物上发表10余篇，其中ESI高被引论文1篇；主持国家自然科学基金2项，湖北省自然科学基金1项，其他厅局级和横向项目10余项，授权国家发明专利3项。目前，担任PLOS ONE等国际期刊编委。主讲《生物大数据》，《生物信息学》等课程。

主要研究论文（#第一作者，*通讯作者）

1. Bintao Guo#, Xinlin Wei#, Shuangcheng   Liu, Wenchao Cui*, Chao   Zhou*. Deep learning modeling of RNA ac4C deposition reveals   the importance of plant alternative splicing Plant Molecular Biology.   2024 Oct 28;114(6):118. （中科院二区，IF5yr=4.6）

2. Kewei Tian, Chang Liu, Yanjun Cai, and Chao Zhou. Role of 6mA in the regulation of metabolic   biosynthesis in Sorghum callus. Journal of Agricultural and Food Chemistry.   2024 Aug 28; 72(34):19232-19245. （中科院一区TOP，IF5yr=6.0）

3. Chao Zhou, Xinlin   Wei, Shuangcheng Liu, Chang Liu, Kexin Tian, Dechun Zhang. Global   Characterization of DNA Methylation during Rice Leaf Angle Development. Journal   of Agricultural and Food Chemistry. 2024 Aug 28;72(34):19219-19231. （中科院一区TOP，IF5yr=6.0）

4. Siqi Ma#, Hanlin Zhou#, Tingting Ren,   Er‑ru   Yu, Bin Feng, Juying Wang, Chengsheng Zhang, Chao Zhou*, Yiqiang Li*. Integrated   transcriptome and metabolome analysis revealed that HaMYB1 modulates   anthocyanin accumulation to deepen sunflower flower color. Plant   Cell Reports. 2024 Feb 43, 74. （中科院二区，IF5yr=5.3）

5. Zhe Wang#, Sen Xiang#, Chao Zhou* and Qing Xu.   DeepMethylation: a deep learning based framework with GloVe and Transformer   encoder for DNA methylation prediction. PeerJ. 2023 Sep 25:11:e16125. （中科院二区，IF5yr=2.8）

6. Zhou H#, Yan R#, He H#, Wei X, Liu S,   Guo B, Zhang Y, Liu X, Rahman SU, Zhou   C*, He Z*. Transcriptional profiling of long noncoding RNAs   associated with flower color formation in Ipomoea nil. Planta. 2023 May   23;258(1):6. （中科院二区，IF5yr=4.3）

7. Zhou H#, Yuan Z#, Han S#, He   H, Rong J, Guo D, Zhang Y, Zhang D, Liu X*, Zhou C*. Global Decrease in H3K9 Acetylation in   Sorghum Seed Postgermination Stages. Journal of Agricultural and Food Chemistry.   2023 Apr 12;71(14):5836-5850. （中科院一区TOP，IF5yr=6.0）

8. Lanlan Zheng#, Chao Zhou#, Tonghui Li, Zhu Yuan, Hanlin Zhou, Yosuke   Tamada,Yongheng Zhao, Jing Wang, Qian Zheng, Xincai Hao, Ping Huang, Xiangyin   Luo,Xiao Xiao, Lei You, Qinhua Chen, Zhubing Hu, Xuanbin Wang, Kun   Meng,Guodong Wang*, Yonghong Zhang*, Chen Li*.   Global transcriptome analysis reveals dynamic gene expression profiling and   provides insights into biosynthesis of resveratrol and anthraquinones in a   medicinal plant Polygonum cuspidatum. Industrial Crops & Products.   2021; 171(1). （中科院一区TOP，IF5yr=5.7）

9. Chao Zhou#*,   Xiaoyun Liu#, Xinglei Li#, Hanlin Zhou, Sijia Wang, Zhu   Yuan, Yonghong Zhang, Sanhe Li, Aiqing You, Lei Zhou*, Zhengquan   He*. A genome doubling event reshapes rice morphology and products   by modulating chromatin signatures and gene expression profiling. Rice.   2021 Aug 4;14(1):72. （中科院一区TOP，IF5yr=5.4）

10. Lanlan Zheng#, Chen Li#, Xueping Ma,   Hanlin Zhou, Yuan Liu, Ping Wang, Huilan Yang, Yosuke Tamada, Ji Huang,   Chunfei Wang, Zhubing Hu, Xuening Wang, Guodong Wang, Haihong Li, Juntao Hu,   Xiaoyun Liu*, Chao Zhou*,   Yonghong Zhang*. Functional interplay of histone lysine   2-hydroxyisobutyrylation and acetylation in Arabidopsis under dark-induced   starvation. Nucleic Acids Research. 2021 Jul 21;49(13):7347-7360. （中科院二区TOP，IF5yr=16.1）

11. Chao Zhou# Sijia   Wang#, Hanlin Zhou, Zhu Yuan, Tao Zhou, Yonghong Zhang, Sen Xiang,   Fang Yang, Xiangling shen, Dechun Zhang*. Transcriptome sequencing   analysis of sorghum callus with various regeneration capacities. Planta. 2021 Jul 21;254(2):33. （中科院二区，IF5yr=4.3）

12. Xiaoyun Liu, Junling Luo, Tiantian Li, Huilan Yang, Ping Wang,   Lufang Su, Yu Zheng, Chun Bao, Chao   Zhou*. SDG711 Is Involved in Rice Seed Development through   Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone   Modifications. Rice. 2021 Mar 5;14(1):25. （中科院一区TOP，IF5yr=5.4）

13. Chao Zhou*,   Hanlin Zhou, Xueping Ma, Huilan Yang, Ping Wang, Guodong Wang, Lanlan Zheng,   Yonghong Zhang*, Xiaoyun Liu*. Genome-Wide Identification and   Characterization of Main Histone Modifications in Sorghum Decipher Regulatory   Mechanisms Involved by mRNA and Long Noncoding RNA Genes. Journal   of Agricultural and Food Chemistry. 2021 Feb 24;69(7):2337-2347. （中科院一区TOP，IF5yr=6.0）

14. Chao Zhou*,   Zhu Yuan, Xueping Ma, Huilan Yang, Ping Wang, Lanlan Zheng, Yonghong Zhang*,   Xiaoyun Liu*. Accessible chromatin regions and their functional   interrelations with gene transcription and epigenetic modifications in   sorghum genome. Plant communications. 2021 Jan 11; 2(1): 100140. （中科院一区TOP，IF5yr=9.5）

15. Chao Zhou, Changshi   Wang, Hongbo Liu, Qiangwei Zhou, Qian Liu, Yan Guo, Ting Peng, Jiaming Song,   Jianwei Zhang, Lingling Chen, Yu Zhao, Zhixiong Zeng* and Dao-Xiu   Zhou*. Identification and analysis of adenine N6-methylation sites   in the rice genome. Nature Plants. 2018   Aug;4(8):554-563. （中科院一区TOP，IF5yr=17.1，高被引论文）

16. Shaoli Zhou#, Xiaoyun Liu#, Chao Zhou#, Qiangwei Zhou,   Yu Zhao, Guoliang Li, and Dao-Xiu Zhou*. Cooperation between the H3K27me3   Chromatin Mark and Non-CG Methylation in Epigenetic Regulation. Plant   Physiology. 2016 Oct;172(2):1131-1141. （中科院一区TOP，IF5yr=7.6）

17. Feng Tan#, Chao   Zhou# , Qiangwei Zhou#, Shaoli Zhou, Wenjing Yang,   Yu Zhao, Guoliang Li, and Dao-Xiu Zhou. Analysis of Chromatin Regulators   Reveals Specific Features of Rice DNA Methylation Pathways. Plant   Physiology. 2016 Jul;171(3):2041-54. （中科院一区TOP，IF5yr=7.6）

近五年科研项目

1. 国家自然科学面上项目，SbALKBH和SbHDA介导多肽激素影响高粱胚性愈伤再生能力的表观调控机制研究，2024.01-2027.12，主持。

2. 国家自然科学青年基金，SbALKBH1A介导DNA 6mA影响高粱胚性愈伤再生能力的机制研究，2020.01-2022.12，主持。

3. 湖北省自然科学基金计划一般面上项目，多组学解析高粱悬浮培养细胞合成3-脱氧花青素及其调控机制研究，2022.10-2024.09，主持。

4. 湖北省教育厅科学研究计划重点项目，基于m6A介导愈伤再生的表观调控机制建立高效、非基因型依赖的高粱遗传转化体系，2023.01-2025.12，主持。

5. 湖北省教育厅科学技术研究计划优秀中青年人才项目，DNA腺嘌呤修饰对高粱花粉发育的表观调控机制研究，2019.01-2020.12，主持。

6. 三峡大学高层次人才科研启动基金，2018.10-2021.09，主持。