姓 名:
杨军 性 别:
男
电 话:
+86- 职 称:
研究员
通讯地址:
厦门市集美大道1799号
邮政编码:
361021 电子邮件:
jyang@iue.ac.cn


简历：
杨军，博士，研究员，博士生导师。
2001年毕业于河北大学生物科学专业并获学士学位；2006年获中国科学院水生生物研究所水生生物学专业博士学位；2006-2008年加拿大Dalhousie大学地球科学系Killam博士后；2008年11月至今，中国科学院城市环境研究所研究员，创建水生态健康研究组。研究组注重科研人才培养，以生态健康为视角，聚焦水生态安全和微食物网，研究饮用水源地、景观水体等城市水环境微生态学问题，为城市水环境保护和生态管理提供对策与依据。先后承担科技部、基金委、中科院、福建省、厦门市等科研项目近30项，获得厦门市****基金和福建省****基金资助，发表学术论文100篇，包括ISME J、Microbiome、Environ Int、Water Res、EST等环境与生态领域SCI论文82篇。在水库型水源地水质保护与微型浮游生物生态过程方面研究结果引起国际同行关注，被国内外多家媒体报道。

研究领域：
水生态健康、藻类水华与富营养化、微型生物生态过程与机制、生物监测与生态评价
社会任职：
中国生态学学会淡水生态专业委员会委员，中国动物学会原生动物学分会理事，中国海洋湖沼学会湖泊分会理事，国际微生物生态学会（ISME）会员，国际湖沼学会（SIL）会员，European Journal of Ecology和Scientific Reports编委，《水生生物学报》和《湖泊科学》编委，作为大会主席成功组织召开第6届国际有壳虫学术会议（ISTA6）。
获奖及荣誉：
加拿大Killam博士后奖、第12届国际原生动物学大会最佳报告奖、中国科学院院长奖、厦门市科技奖
代表论著：
100) Ndayishimiye JC, Nyirabuhoro P, Wang Q, Yang XD, Yang J*. 2020. Effects of natural and anthropogenic changes on testate amoebaecommunities in an alpine lake over the past 2500 years. Science of the Total Environment in press (SCI二区, 通讯作者)
99) Nyirabuhoro P, Liu M, Xiao P, Liu LM, Yu Z, Wang LN, Yang J*. 2020. Seasonal variability of conditionally rare taxa in the water column bacterioplankton community of subtropical reservoirs in China. Microbial Ecology in press (SCI三区, 通讯作者)
98) Pan YB, Yang J, McManus GB, Lin SJ, Zhang WJ*. 2020. Insights into protist diversity and biogeography in intertidal sediments sampled across a range of spatial scales. Limnology and Oceanography in press (SCI二区)
97) Peng F, Guo YY, Isabwe A, Chen HH, Wang YM, Zhang YP, Zhu ZX, Yang J*. 2020. Urbanization drives riverine bacterial antibiotic resistome more than taxonomic community at watershed scale. Environment International 137, 105524 (2020.04.01) DOI: https://doi.org/10.1016/j.envint.2020.105524 (SCI一区, 通讯作者)
96) Wang YM, Pan J, Yang J, Zhou ZC, Pan YP, Li M*. 2020. Patterns and processes of free-living and particle-associated bacterioplankton and archaeaplankton communities in a subtropical river-bay system in South China. Limnology and Oceanography 65: S161–S179 (2020.01.22) DOI: https://doi.org/10.1002/lno.11314 (SCI二区)
95) Gao XF, Chen HH, Govaert L, Wang WP, Yang J*. 2019. Responses of zooplankton body size and community trophic structure to temperature change in a subtropical reservoir. Ecology and Evolution 9: 12544–12555 (2019.11.25) DOI: https://doi.org/10.1002/ece3.5718 (SCI三区, 通讯作者)
94) Liu X#, Xiao P#, Guo YY, Liu LM, Yang J*. 2019. The impacts of different high-throughput profiling approaches on the understanding of bacterial antibiotic resistance genes in a freshwater reservoir. Science of the Total Environment 693: 133585 (2019.11.25) DOI: https://doi.org/10.1016/j.scitotenv.2019.133585 (SCI二区, 通讯作者)
93) Chen WD, Ren KX, Isabwe A, Chen HH, Liu M, Yang J*. 2019. Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons. Microbiome 7:138 (2019.10.22) DOI: https://doi.org/10.1186/s40168-019-0749-8 (SCI一区, 通讯作者)
92) Bobrov AA, Shimano S, Qin Y, Yang J. 2019 Testate amoebae of the Gondwana-tropical group and the southwestern border of the Palearctic. Biology Bulletin 46: 450–456 (2019.09.23) DOI: https://doi.org/10.1134/S50054 (SCI四区)
91) Lu T, Zhang Q, Lavoie M, Zhu YC, Ye YZ, Yang J, Paerl HW, Qian HF*, Zhu YG*. 2019. The fungicide azoxystrobin promotes freshwater cyanobacterial dominance through altering competition. Microbiome 7: 128 (2019.09.04) DOI: https://doi.org/10.1186/s40168-019-0744-0 (SCI一区)
90) Liu LM, Chen HH, Liu M, Yang JR, Xiao P, Wilkinson DM, Yang J*. 2019. Response of the eukaryotic plankton community to the cyanobacterial biomass cycle over six years in two subtropical reservoirs. The ISME Journal in press DOI: https://doi.org/10.1038/s41396-019-0417-9 (SCI一区, 通讯作者)
89) Feng P#, Isabwe A#, Guo YY, Chen HH, Yang J*. 2019. An extensively shared antibiotic resistome among four seasons suggests management prioritization in a subtropical riverine ecosystem. Science of The Total Environment 673: 533–540 (2019.07.10) DOI: https://doi.org/10.1016/j.scitotenv.2019.04.031 (SCI二区, 通讯作者)
88) Fang P, Peng F, Gao XF, Xiao P, Yang J*. 2019. Decoupling the dynamics of bacterial taxonomy and antibiotic resistance function in a subtropical urban reservoir as revealed by high-frequency sampling. Frontiers in Microbiology in press (2019.07.02) DOI: https://doi.org/10.3389/fmicb.2019.01448 (SCI二区, 通讯作者)
87) Isabwe A, Ren KX, Wang YM, Peng F, Chen HH, Yang J*. 2019. Community assembly mechanisms underlying the core and random bacterioplankton and microeukaryotes in a river-reservoir system. Water 11: 1127 (2019.06.26) DOI: https://doi.org/10.3390/w** (SCI三区, 通讯作者)
86) Ndayishimiye JC#, Ju LH#, Li HK, Yang XD, Liu ZW, Yang J*. 2019. Temperature transfer functions based on freshwater testate amoebae from China. European Journal of Protistology 69: 152–164 (2019.06.01) DOI: https://doi.org/10.1016/j.ejop.2019.03.003 (SCI三区, 通讯作者)
85) Liu M, Liu LM, Chen HH, Yu Z, Yang JR, Xue YY, Huang BQ, Yang J*. 2019. Community dynamics of free-living and particle-attached bacteria following a reservoir Microcystis bloom. Science of the Total Environment 660: 501–511 (2019.04.10) DOI: 10.1016/j.scitotenv.2018.12.414 (SCI二区, 通讯作者)
84) 朱珍香, 高肖飞, 彭凤, 陈辉煌, 唐立娜, 杨军*. 2019. 厦门后溪水质与流域景观特征沿城乡梯度的变化分析. 生态学报39(6): 2021–2033 (2019.03.30) DOI: 10.5846/stxb5（通讯作者）
83) Liu M, Xue YY, Yang J*. 2019. Rare plankton subcommunities are far more affected by DNA extraction kits than abundant plankton. Frontiers in Microbiology 10: 454 (2019.03.11) DOI: 10.3389/fmicb.2019.00454 (SCI二区, 通讯作者)
82) Ren KX, Xue YY, R？nn R, Liu LM, Chen HH, Rensing C*, Yang J*. 2018. Dynamics and determinants of amoeba community, occurrence and abundance in subtropical reservoirs and rivers. Water Research 146: 177–186 (2018.12.01) DOI: 10.1016/j.watres.2018.09.011 (SCI一区, 通讯作者)
81) Hu AY*, Li S, Zhang LP, Wang HJ, Yang J, Luo ZX, Rashid A, Chen SQ, Huang WX, Yu CP. 2018. Prokaryotic footprints in urban water ecosystems: a case study of urban landscape ponds in a coastal city, China. Environmental Pollution 242: 1729–1739 (2018.11.01) DOI: 10.1016/j.envpol.2018.07.097 (SCI二区)
80) Kuo YM, Yang J, Liu WW, Zhao EM, Li R, Yao LQ. 2018. Using generalized additive models to investigate factors influencing cyanobacterial abundance through phycocyanin fluorescence in East Lake, China. Environmental Monitoring and Assessment 190: 599 (2018.10.01) DOI: 10.1007/s10661-018-6981-z (SCI四区)
79) Yan WF, Guo YY, Xiao Y*, Wang SH, Ding R, Jiang JQ, Gang HY, Wang H, Yang J, Zhao F*. 2018. The changes of bacterial communities and antibiotic resistance genes in microbial fuel cells during long-term oxytetracycline processing. Water Research 142: 105–114 (2018.10.01) DOI: 10.1016/j.watres.2018.05.047 (SCI一区)
78) Xue YY, HH Chen, Yang JR, Liu M, Huang BQ, Yang J*. 2018. Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom. The ISME Journal 12: 2263–2277 (2018.09.01) DOI: 10.1038/s41396-018-0159-0 (SCI一区, 通讯作者)
77) Mo YY, Zhang WJ*, Yang J*, Lin YS, Yu Z, Lin SJ. 2018. Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes. The ISME Journal 12: 2198–2210 (2018.09.01) DOI: 10.1038/s41396-018-0153-6 (SCI一区, 通讯作者)
76) Liu LM#, Su JQ#, Guo YY#, Wilkinson DM, Liu ZW, Zhu YG, Yang J*. 2018. Large-scale biogeographical patterns of bacterial antibiotic resistome in waterbodies of China. Environment International 117: 292–299 (2018.08.01) DOI: 10.1016/j.envint.2018.05.023 (SCI一区, 通讯作者)
75) Guo YY, Liu M, Liu LM, Liu X, Chen HH, Yang J*. 2018. The antibiotic resistome of free-living and particle-attached bacteria under a reservoir cyanobacterial bloom. Environment International 117: 107–115 (2018.08.01) DOI: 10.1016/j.envint.2018.04.045 (SCI一区, 通讯作者)
74) Zhang WJ*, Mo YY, Yang J, Zhou J, Lin YS, Isabwe A, Zhang J, Gao X, Yu Z. Genetic diversity pattern of microeukaryotic communities and its relationship with the environment based on PCR-DGGE and T-RFLP techniques in Dongshan Bay, southeast China. Continental Shelf Research 164: 1–9 (2018.07.15) DOI: 10.1016/j.csr.2018.05.006 (SCI三区)
73) Isabwe A, Yang JR, Wang YM, Liu LM, Chen HH, Yang J*. 2018. Community assembly processes underlying phytoplankton and bacterioplankton across a hydrologic change gradient in a human-impacted river. Science of the Total Environment 630: 658–667 (2018.07.15) DOI: 10.1016/j.scitotenv.2018.02.210 (SCI二区, 通讯作者)
72 ) 朱珍香, 杨军*. 2018. 福建水库空间分布特征：沿海密度高量少、内陆低多. 湖泊科学30: 567–580 (2018.03.06) DOI: 10.18307/2017.020 (通讯作者)
71) Zhang WJ*, Pan YB, Yang J, Chen HH, Holohan B, Vaudrey J, Lin SJ, McManus GB*. 2018. The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation. Environmental Microbiology 20: 462–476 (2018.02.14) DOI: 10.1111/1462-2920.13916 (SCI二区)
70) Liu M, Yu Z, Yu XQ, Xue YY, Huang BQ, Yang J*. 2017. Invasion by cordgrass increases microbial diversity and alters community composition in a mangrove nature reserve. Frontiers in Microbiology 8: 2503 (2017.12.15) DOI: 10.3389/fmicb.2017.02503 (SCI二区, 通讯作者)
69) Chen WD, Pan YB, Yu LY, Yang J*, Zhang WJ*. 2017. Patterns and processes in marine microeukaryotic community biogeography from Xiamen coastal waters and intertidal sediments, Southeast China. Frontiers in Microbiology 8: 1912 (2017.10.12) DOI: 10.3389/fmicb.2017.01912 (SCI二区, 通讯作者)
68) Xue YY, Yu Z, Chen HH, Yang RJ, Liu M, Liu LM, Huang BQ, Yang J*. 2017. Cyanobacterial bloom significantly boosts hypolimnelic anammox bacterial abundance in a subtropical stratified reservoir. FEMS Microbiology Ecology 93: fix118 (2017.10.01) DOI: 10.1093/femsec/fix118 (SCI二区, 通讯作者)
67) Liu LM, Liu M, Wilkinson DM, Chen HH, Yu XQ, Yang J*. 2017. DNA metabarcoding reveals that 200 μm size-fractionated filtering is unable to discriminate between planktonic microbial and large eukaryotes. Molecular Ecology Resources 17: 991–1002 (2017.09.01) DOI: 10.1111/1755-0998.12652 (SCI二区, 通讯作者) 66) Yang JR, Lv H, Isabwe A, Liu LM, Yu XQ, Chen HH, Yang J*. 2017. Disturbance-induced phytoplankton regime shifts and recovery of cyanobacteria dominance in two subtropical reservoirs. Water Research 120: 52–63 (2017.09.01) DOI: 10.1016/j.watres.2017.04.062 (SCI一区, 通讯作者)
65) 王丽娜, 陈辉煌, 刘乐冕, 余正, 杨军*. 2016. 亚热带分层水库固氮微生物时空分布格局. 生态学报, 36: 5827–5837 (2016.09.15) DOI: 10.5846/stxb4 (通讯作者)
64) Yang J, Lv H, Yang J*, Liu LM, Yu XQ, Chen HH. 2016. Decline in water level boosts cyanobacteria dominance in subtropical reservoirs. Science of the Total Environment 557/558: 445–452 (2016.07.01) DOI: 10.1016/j.scitotenv.2016.03.094 (SCI二区, 通讯作者)
63) Wang HT, Liao GS, D’Souza M, Yu XQ, Yang J, Yang XR, Zheng TL. 2016. Temporal and spatial variations of greenhouse gas fluxes from a tidal mangrove wetland in Southeast China. Environmental Science and Pollution Research 23: 1873–1885 (2016.01.15) DOI: 10.1007/s11356-015-5440-4 (SCI三区)
62) Wang LN, Yu Z, Yang J*, Zhou J. 2015. Diazotrophic bacterial community variability in a subtropical deep reservoir is correlated with seasonal changes in nitrogen. Environmental Science and Pollution Research 22: 19695–19705 (2015.12.15) DOI: 10.1007/s11356-015-5144-9 (SCI三区, 通讯作者)
61) Wang YM, Liu LM, Chen HH, Yang J*. 2015. Spatiotemporal dynamics and determinants of planktonic bacterial and microeukaryotic communities in a Chinese subtropical river. Applied Microbiology and Biotechnology 99: 9255–9266 (2015.11.01) DOI: 10.1007/s00253-015-6773-0 (SCI二区, 通讯作者)
60) 王丽娜, 余正, 田野, 张文静, 杨军*. 2015. 基于克隆文库技术分析瘤棘砂壳虫的食物组成. 生态学报, 35: 6183–6188 (2015.09.15) DOI: 10.5846/stxb5 (通讯作者)
59) Liu LM#, Yang J#, Lv H#, Yu XQ, Wilkinson DM, Yang J*. 2015. Phytoplankton communities exhibit a stronger response to environmental changes than bacterioplankton in three subtropical reservoirs. Environmental Science & Technology 49: 10850–10858 (2015.09.15) DOI: 10.1021/acs.est.5b02637 (SCI一区, 通讯作者)
58) Liu Y, Yang J*. 2015. Complete mitochondrial genome of Esox reichertii (Amur pike). Mitochondrial DNA 26: 927–928 (2015.09.01) DOI: 10.3109/**.2013.863294 (SCI三区, 通讯作者)
57) Liu LM, Yang J*, Yu Z, Wilkinson DM. 2015. The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China. The ISME Journal 9: 2068–2077 (2015.09.01) DOI: 10.1038/ismej.2015.29 (SCI一区, 通讯作者)
56) Yu Z, Yang J*, Liu LM, Zhang WJ, Amalfitano S. 2015. Bacterioplankton community shifts associated with epipelagic and mesopelagic waters in the Southern Ocean. Scientific Reports 5: 12897 (2015.08.10) DOI: 10.1038/srep12897 (SCI三区, 通讯作者)
55) Wang YM, Yang J*, Liu LM, Yu Z. 2015. Quantifying the effects of geographical and environmental factors on distribution of stream bacterioplankton within nature reserves of Fujian, China. Environmental Science and Pollution Research 22: 11010–11021 (2015.07.01) DOI: 10.1007/s11356-015-4308-y (SCI三区, 通讯作者)
54) Yu LY, Zhang WJ*, Liu LM, Yang J. 2015. Determining microeukaryotic plankton community around Xiamen Island, southeast China, using Illumina MiSeq and PCR-DGGE techniques. PLoS ONE 10: e** (2015.05.28) DOI: 10.1371/journal.pone.** (SCI三区)
53) Yu XQ, Yang J*, Liu LM, Tian Y, Yu Z. 2015. Effects of Spartina alterniflora invasion on biogenic elements in a subtropical coastal mangrove wetland. Environmental Science and Pollution Research 22:3107–3115 (2015.02.01) DOI: 10.1007/s11356-014-3568-2 (SCI三区, 通讯作者)
52) Gomaa F#,*, Yang J#,*, Mitchell EAD, Zhang WJ, Yu Z, Todorov M, Lara E. 2015. Morphological and molecular diversification of Asian endemic Difflugia tuberspinifera (Amoebozoa, Arcellinida): a case of fast morphological evolution in protists? Protist 166: 122–130 (2015.02.01) DOI: 10.1016/j.protis.2014.11.004 (SCI三区, 通讯作者)
51) Yu Z, Zhou J, Yang J*, Yu XQ, Liu LM. 2014. Vertical distribution of diazotrophic bacterial community associated with temperature and oxygen gradients in a subtropical reservoir. Hydrobiologia 741: 69–77 (2014.12.01) DOI: 10.1007/s10750-014-1832-6 (SCI三区, 通讯作者)
50) 周菁, 余正, 刘开国, 田野, 余小青, 刘乐冕, 张文静, 杨军*. 2014. 典型亚热带热分层水库秋季细菌群落垂直分布. 生态学报, 34: 6205–6213 (2014.11.01) DOI:10.5846/stxb6 (通讯作者)
49) Liu Y, Yang J*. 2014. The complete mitochondrial genome sequence of Xingkai topmouth culter (Culter alburnus). Mitochondrial DNA 25: 451–453 (2014.11.01) DOI: 10.3109/**.2013.809430 (SCI三区, 通讯作者)
48) Ju LH, Yang J*, Liu LM, Wilkinson DM. 2014. Diversity and distribution of freshwater testate amoebae (Protozoa) along latitudinal and trophic gradients in China. Microbial Ecology 68: 657–670 (2014.11.01) DOI: 10.1007/s00248-014-0442-1 (SCI二区, 通讯作者)
47) Liu LM, Yang J*, Lv H, Yu Z. 2014. Synchronous dynamics and correlations between bacteria and phytoplankton in a subtropical drinking water reservoir. FEMS Microbiology Ecology 90: 126–138 (2014.10.01) DOI: 10.1111/1574-6941.12378 (SCI二区, 通讯作者)
46) Wang YB, Zhang WJ*, Lin YS, Zheng LM, Cao WQ, Yang J. 2014. Spatial and seasonal variations of large Tintinnid ciliates in Shenhu Bay of China. Oceanological and Hydrobiological Studies 43: 292–302 (2014.09.01) DOI: 10.2478/s13545-014-0144-9 (SCI四区)
45) Yu Z, Yang J*, Amalfitano S, Yu XQ, Liu LM. 2014. Effects of water stratification and mixing on microbial community structure in a subtropical deep reservoir. Scientific Reports 4: 5821 (2014.07.25) DOI: 10.1038/srep05821 (SCI三区, 通讯作者)
44) Wang YB, Zhang WJ*, Lin YS, Cao WQ, Zheng LM, Yang J. 2014. Phosphorus, nitrogen and chlorophyll-a are significant factors controlling ciliate communities in summer in the northern Beibu Gulf, South China Sea. PLoS ONE 9: e101121 (2014.07.02) DOI: 10.1371/journal.pone.** (SCI三区)
43) Lv H, Yang J*, Liu LM, Yu XQ, Yu Z, Chiang PC. 2014. Temperature and nutrients are significant drivers of seasonal shift in phytoplankton community from a drinking water reservoir, subtropical China. Environmental Science and Pollution Research 21: 5917–5928 (2014.05.01) DOI: 10.1007/s11356-014-2534-3 (SCI三区, 通讯作者)
42) Yu Z, Zhang WJ, Liu LM, Yang J*. 2014. Evidence for two different morphotypes of Difflugia tuberspinifera from China. European Journal of Protistology 50: 205–211 (2014.04.01) DOI: 10.1016/j.ejop.2013.12.003 (SCI三区, 通讯作者)
41) Yu Z, Yang J*, Yu XQ, Liu LM, Tian Y. 2014. Aboveground vegetation influences belowground microeukaryotic community in a mangrove nature reserve. Wetlands 34: 393–401 (2014.04.01) DOI: 10.1007/s13157-013-0506-x (SCI四区, 通讯作者)
40) Yu Z, Yang J*, Liu LM. 2014. Denitrifier community in the oxygen minimum zone of a subtropical deep reservoir. PLoS ONE 9: e92055 (2014.03.24) DOI: 10.1371/journal.pone.** (SCI三区, 通讯作者)
39) Tu YT, Chiang PC, Yang J, Chen SH, Kao CM. 2014. Application of a constructed wetland system for polluted stream remediation. Journal of Hydrology 510: 70–78 (2014.03.14) DOI: 10.1016/j.jhydrol.2013.12.015 (SCI二区)
38) Yu Z, Yang J*, Zhou J, Yu XQ, Liu L M, Lv H. 2014. Water stratification affects the microeukaryotic community in a subtropical deep reservoir. Journal of Eukaryotic Microbiology 61: 126–133 (2014.03.13) DOI: 10.1111/jeu.12090 (SCI三区, 通讯作者)
37) Wang YB, Zhang WJ, Lin YS, Zheng LM, Cao WQ, Yang J. 2013. Spatial pattern of the planktonic ciliate community and its relationship with the environment in spring in the northern Beibu Gulf, South China Sea. Oceanological and Hydrobiological Studies 42: 470–479 (2013.12.01) DOI: 10.2478/s13545-013-0103-x (SCI四区)
36) Lv H, Yang J*, Liu LM. 2013. Temporal pattern prevails over spatial variability in phytoplankton communities from a subtropical water supply reservoir. Oceanological and Hydrobiological Studies 42: 420–430 (2013.12.01) DOI: 10.2478/s13545-013-0098-3 (SCI四区, 通讯作者)
35) Liu LM, Yang J*, Yu XQ, Chen GJ, Yu Z. 2013. Patterns in the composition of microbial communities from a subtropical river: Effects of environmental, spatial and temporal factors. PLoS ONE 8: e81232 (2013.11.14) DOI: 10.1371/journal.pone.** (SCI三区, 通讯作者)
34) Wang CF, Yu XQ, Lv H, Yang J*. 2013. Nitrogen and phosphorus removal from municipal wastewater by the green alga Chlorella sp. Journal of Environmental Biology 34: 421–425 (2013.04.01) (SCI四区, 通讯作者)
33) Liu LM, Zhang DH, Lv H, Yu XQ, Yang J*. 2013. Plankton communities along a subtropical urban river (Houxi River, southeast China) as revealed by morphological and molecular methods. Journal of Freshwater Ecology 28:99–112 (2013.03.01) DOI: 10.1080/**.2012.708672 (SCI四区, 通讯作者)
32) 余小青, 杨军*, 刘乐冕, 田原, 余正, 王昌付. 2012. 九龙江口滨海湿地生源要素空间分布特征. 环境科学, 33:3739–3747 (2012.11.15) DOI: 10.13227/j.hjkx.2012.11.021 (通讯作者)
31) 刘乐冕, 杨军*, 余小青, 余正, 张永雨, 田野, 张冬红. 2012. 厦门后溪流域沿城乡梯度浮游细菌多样性及其与环境因子的关系. 应用与环境生物学报, 18: 591–598 (2012.08.25) DOI: 10.3724/SP.J.1145.2012.00591 (通讯作者)
30) Zhang YY, Yang J*, Yin XX, Yang SP, Zhu YG*. 2012. Arsenate toxicity and stress responses in the freshwater ciliate Tetrahymena pyriformis. European Journal of Protistology 48: 227–236 (2012.08.01) DOI: 10.1016/j.ejop.2012.01.005 (SCI三区, 通讯作者)
29) Yang J*, Yu XQ, Liu LM, Zhang WJ, Guo PY. 2012. Algae community and trophic state of subtropical reservoirs in southeast Fujian, China. Environmental Science and Pollution Research 19: 1432–1442 (2012.06.01) DOI: 10.1007/s11356-011-0683-1 (SCI三区, 通讯作者)
28) Zhang YY, Zhang F, Yang J, Jiao NZ. 2012. Host responses of a marine bacterium, Roseobacter denitrificans OCh114, to phage infection. Archives of Microbiology 194: 323–330 (2012.05.01) DOI:10.1007/s00203-011-0765-y (SCI四区)
27) Zhang WJ*, Lin YS, Cao WQ, Yang J. 2012 Genetic diversity and variance of Stentor coeruleus (Ciliophora: Heterotrichea) inferred from inter-simple sequence repeat (ISSR) fingerprinting. Journal of Eukaryotic Microbiology 59: 157–162 (2012.03.01) DOI: 10.1111/j.1550-7408.2011.00603.x (SCI三区)
26) Yang J, Zhang YY, Liu LM, Wang CF, Yu XQ. 2012. Microbial community and urban water quality. Bulletin of the Chinese Academy of Sciences 26: 76–83 (2012.03.01) DOI: 10.3969/j.issn.1003-3572.2012.01.011
25) Liu LM, Yang J*, Zhang YY. 2011. Genetic diversity patterns of microbial communities of in a subtropical riverine ecosystem (Jiulong River, southeast China). Hydrobiologia 678:113–125 (2011.12.01) DOI: 10.1007/s10750-011-0834-x (SCI三区, 通讯作者)
24) Zhang YY, Chen ZH, Zhen Z, Yang J. 2011. Metaproteomic evaluation on the microbial community functions in a mesoscale cyclonic eddy perturbation. African Journal of Microbiology Research 5: 3890–3894 (2011.10.23) DOI: 10.5897/AJMR11.577 (SCI四区)
23) Zhang YY, Huang CX, Yang J*, Jiao NZ. 2011. Interactions between marine microorganisms and their phages. Chinese Science Bulletin 56: 1770–1777 (2011.06.01) DOI: 10.1007/s11434-011-4503-2 (SCI三区, 通讯作者) 23a) 张永雨, 黄春晓, 杨军*, 焦念志. 2011. 海洋微生物与噬菌体间的相互关系. 科学通报, 56: 1071–1079 (2011.05.01) (通讯作者)
22) Yin XX, Zhang YY, Yang J, Zhu YG*. 2011. Rapid biotransformation of arsenic by a model protozoan Tetrahymena thermophila. Environmental Pollution 159:837–840 (2011.04.01）DOI: 10.1016/j.envpol.2010.12.033 (SCI二区)
21) 刘乐冕, 杨军*, 张文静, 余正. 2010. 原生动物瘤棘砂壳虫六个自然种群的形态计量学分析. 动物学研究, 31(4): 435–443 (2010.08.22) DOI: 10.3724/SP.J.1141.2010.04435 (通讯作者)
20) 杨军*, Smith HG, Wilkinson DM. 2010. 北极、南极和西藏有壳虫区系与分布. 生物多样性, 18(4): 373–382 (2010.07.20) (通讯作者)
19) Yang J, Smith HG, Sherratt TN, Wilkinson DM. 2010. Is there a size limit for cosmopolitan distribution in free-living microorganisms? A biogeographical analysis of testate amoebae from polar areas. Microbial Ecology 59:635–645 (2010.05.01) DOI: 10.1007/s00248-009-9615-8 (SCI二区, Cover story)
18) 张文静, 杨军, 田野. 2010. 有壳肉足虫的结构、运动以及生殖. 生物学通报, 45(1): 12–14 (2010.01.20)
17) Yang J*, Zhang WJ, Shen YF. 2009. Relationships between testate amoebae assemblages (Protozoa) and geographic factors in Yunnan Plateau lakes, China. Journal of Freshwater Ecology 24: 437–443 (2009.09.03) DOI: 10.1080/**.2009.** (SCI四区, 通讯作者)
16) 张文静, 杨军*, 沈韫芬. 2009. 中国有壳肉足虫(原生动物)五新纪录描述. 动物分类学报, 34(3): 686–690 (2009.07.01) (通讯作者)
15) Yang J*, Zhang WJ, Shen YF, Feng WS, Wang XH. 2007. Monitoring of organochlorine pesticides using PFU systems in Yunnan lakes and rivers, China. Chemosphere 66: 219–225 (2007.01.15) DOI: 10.1016/j.chemosphere.2006.05.055 (SCI二区, 通讯作者)
14) Zhang WJ, Yang J, Yu YH, Shu SW, Shen YF. 2006. Population genetic structure of Carchesium polypinum (Ciliophora: Peritrichia) in four Chinese lakes inferred from ISSR fingerprinting: high diversity but low differentiation. Journal of Eukaryotic Microbiology 53: 358–363 (2006.10.01) DOI: 10.1111/j.1550-7408.2006.00113.x (SCI三区)
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10) Yang J, Zhang WJ, Feng WS, Shen YF. 2005. Testate amoebae (Protozoa: Rhizopoda) from northwest Yunnan, China. Journal of Freshwater Ecology 20: 583–590 (2005.09.01) DOI: 10.1080/**.2005.** (SCI四区)
9) Zhang WJ, Yang J, Yu YH, Shen YF. 2005. Identification, cloning and characterization of microsatellite DNA in Euglena gracilis. Journal of Eukaryotic Microbiology 52: 356–359 (2005.07.01) DOI: 10.1111/j.1550-7408.2005.00044.x (SCI三区)
8) Yang J, Shen YF. 2005. Morphology, biometry and distribution of Difflugia biwae Kawamura, 1918 (Protozoa: Rhizopoda). Acta Protozoologica 44: 103–111 (2005.05.01) (SCI四区)
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承担科研项目情况(研究经费)：
29) 中国科学院“美丽中国生态文明建设科技工程”A类战略性先导科技专项子课题：长江经济带干流典型城市群水环境效应与黑臭水体关键治理技术(XDA**)。2019.01–2023.12。主持，在研。
28) 福建省自然科学基金重点项目：福建典型水库浮游生物多样性特征与群落稳定性机制(2019J02016)。2019.04–2022.04。主持，在研。
27) 国家自然科学基金重大研究计划培育项目：亚热带河流水库浮游微生物群落构建及其碳氮循环耦合机制与效应(**)。2019.01–2021.12。主持，在研。
26) 中国科学院城市环境与健康重点实验室跨组合作项目：耦合城市景观格局演变与污染物水陆迁移的流域生态风险研究(KLUEH-C-201801)。2018.03–2020.02。参加，在研。
25) 金砖国家领导人厦门会晤期间环境质量保障项目：厦门水库群水质安全监测。2017.07–2017.09。主持，完成。
24) 国家重点研发计划项目：我国季风区湖泊生态系统长期演变机理与生态安全(2017YFA**)。2017.06–2022.06。专题负责人，在研。
23) 厦门市科技计划项目：水源地环境质量监测与污染突发事故的应急处置技术(3502Z**)。2017.01–2019.12。参加，在研。
22) 厦门市科技计划项目：基于高通量测序的微型生物水质监测与评价方法研究(3502Z**)。2017.03–2019.12。主持，在研。
21) 国家自然科学基金面上项目：水库瘤棘砂壳虫分子系统地理学研究(**)。2017.01–2020.12。主持，在研。
20) 国家自然科学基金面上项目：亚热带分层水库营养状态波动的时空特征与微生态学机理(**)。2014.01–2017.12。主持，完成。
19) 横向项目：紫金山金铜矿联合开发项目竣工环境保护验收水生态影响调查。2013.07–2014.07。主持，完成。
18) 厦门市环境保护科研所项目：莲花水库水华风险预警技术研究。2012.07–2013.04。主持，完成。
17) 国家自然科学基金国际（地区）合作交流项目：第六届国际有壳虫学术会议()。2012.07–2012.12。主持，完成。
16) 国家重大科学研究计划项目：湖泊与湿地生态系统对全球变化的响应及生态恢复对策研究(2012CB956103)。2012.01–2016.08。专题负责人，完成。
15) 国家国际科技合作专项项目：中国东南沿海城市群环境污染调控技术与示范 (2011DFB91710)。2012.01–2015.01。参加，完成。
14）国家高技术研究发展计划(863)课题：饮用水生物污染监测预警技术(2012AA062607)。2012.01–2014.12。参加，完成。
13) 福建省****科学基金项目：福建典型水库型水源地富营养化特征、过程和驱动机制(2012J06009)。2012.01–2014.12。主持，完成。
12) 国家自然科学基金面上项目：水库型水源地有壳虫多样性及其与氮磷的关系(**)。2012.01–2015.12。主持，完成。 11) 国家自然科学基金重点项目：过去两千年多重环境压力对云南湖泊环境的影响及驱动机制(U**)。2012.01–2015.12。参加，完成。
10) 厦门市科技计划****项目：微型生物群落在水源地水质监测与预警中的应用(3502Z**)。2010.10–2012.09。主持，完成。
9) 教育部留学回国人员科研启动基金：饮用水源地微型生物生态特征及藻类水华爆发早期预警——以厦门为例。2010.11–2012.11。主持，完成。
8) 厦门市科技计划项目：九龙江水源安全饮用水保障技术研究(3502Z**)。2010.01–2012.12。参加，完成。
7) 中科院知识创新工程重要方向项目：厦门水库型水源地原生动物多样性及其水质监测(KZCX2-YW-QN401)。2010.01–2012.12。主持，完成。
6) 国家国际科技合作专项项目：城市群环境复合污染与生态健康研究(2009DFB90120)。2009.06–2012.06。参加，完成。
5) 优秀博士学位论文、院长奖获得者科研启动专项资金项目：九龙江河口湿地原生动物群落生态特征。2009.06–2011.06。主持，完成。
4) 福建省科技计划重点项目：饮用水水源安全性的微型生物诊断技术(2009Y0044)。2009.03–2011.12。主持，完成。
3) 中科院知识创新工程重要方向项目：城市滨海湿地生源要素循环的界面过程及还原性气体排放的微生态学机制(KZCX2-YW-Q02-04)。2009.01–2011.12。参加，完成。
2) 加拿大Killam研究项目：加拿大Nova Scotia一万多年以来的气候变化与湖泊原生动物群落演替(49722)。2006.11–2008.11。主持，完成。
1) 中国科学院东湖湖泊生态系统试验站开放研究基金：长江流域有壳肉足虫时空异质性的研究(200202)。2002.05–2004.05。主持，完成。