基本信息
马占山男博导中国科学院昆明动物研究所
电子邮件： ma@vandals.uidaho.edu
通信地址： 中科院昆明动物研究所
邮政编码： 650223

研究领域

招生信息
招生专业071007-遗传学
081203-计算机应用技术

招生方向计算生物学，生物信息学，医学生态学
计算智能和进化计算
网络软件可靠性和可存活性


教育背景2006-03--2008-05University of IdahoPhD in Computer Science
1992-05--1997-12University of IdahoPhD in Entomology, MSc in Computer Science

学历
学位

工作经历
工作简历2010-11~现在,中科院动物研究所,研究员
2008-06~2010-11,University of Idaho,Research Scientist
2006-03~2008-05,University of Idaho,PhD in Computer Science
1998-01~2006-03,Micron Technology, Tumbleweed Communications Corp.,Senior Network/Software Engineer
1992-05~1997-12,University of Idaho,PhD in Entomology, MSc in Computer Science

社会兼职2009-04-01-今,Member of Faculty 1000 of Biology and Medicine,


教授课程

专利与奖励
奖励信息（1） 国家教委“霍英东优秀青年教师基金奖”, , 部委级, 1992

专利成果（ 1 ） 多显卡组合驱动的多显示器系统, 2015, 第 1 作者, 专利号: ZL5.9
（ 2 ） 用于高性能计算机的微型空调制冷系统, 2015, 第 1 作者, 专利号: ZL 2014 2 **.4
（ 3 ） 5.2, 2017, 第 1 作者, 专利号: 5.2
（ 4 ） 4.6, 2017, 第 1 作者, 专利号: 4.6
（ 5 ） 1.0, 2017, 第 1 作者, 专利号: 1.0
（ 6 ） 8.4, 2017, 第 1 作者, 专利号: 8.4
（ 7 ） 4.0, 2017, 第 1 作者, 专利号: 4.0
（ 8 ） 用于组装基因组序列的方法、系统及装置, 2019, 第 2 作者, 专利号: ZL 9.X


出版信息
发表论文（1）Dominance network analysis provides a new framework for studying the diversity–stability relationship,Ecological Monographs,2019,第1作者
（2）Diversity-disease relationships and shared species analyses for human microbiome-associated diseases,The ISME Journal,2019,第1作者
（3）A new DTAR (diversity–time–area relationship) model demonstrated with the indoor microbiome,Journal of Biogeography,2019,第1作者
（4）Comparative Power Law Analysis for the Spatial Heterogeneity Scaling of the Hot-Spring Microbiomes,Molecular Ecology,2019,第11作者
（5）Hybrid assembly of ultra-long Nanopore? reads augmented with 10×genomics? contigs: Demonstrated with a human genome.,Genomics,2019,第11作者
（6）Global Microbiome Diversity Scaling in Hot Springs With DAR (Diversity-Area Relationship) Profiles,Frontiers in Microbiology,2019,第11作者
（7）Semen Microbiome Biogeography: An Analysis Based on a Chinese Population Study,Frontiers in Microbiology,2019,第11作者
（8）The P/N (Positive-to-negative links) ratio in complex networks— a promising in silico biomarkers for detecting changes occurring in the human microbiome.,Microbial Ecology,2017,第1作者
（9）Trios— promising in silico biomarkers for differentiating the effect of disease on the human microbiome network,Scientific Reports,2017,第1作者
（10）Quantifying the human vaginal community state types (CSTs) with the species specificity index.,PeerJ,2017,第1作者
（11）Does colorectal cancer significantly influence the assembly of gut microbial communities?,PeerJ,2017,第11作者
（12）Oral microbial community assembly under the influence of periodontitis.,Plos One,2017,第11作者
（13）CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake EfficiencyJournal of Proteome,Journal of Proteome,2017,第11作者
（14）Reconstructing evolutionary trees in parallel for massive sequences,BMC Systems Biology,2017,第11作者
（15）Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads,PeerJ,2016,第11作者
（16）Integrated network-diversity analyses suggest suppressive e ect of Hodgkin’s lymphoma and slightly relieving e ect of chemotherapy on human milk microbiome,Scientific Reports,2016,第11作者
（17）A Brief Review on the Ecological Network Analysis 1 with Applications in the Emerging Medical Ecology,Springer Methods & Protocol,2016,第11作者
（18）Scientific Reports,2015,第1作者
（19）Cognitive System Research,2015,第1作者
（20）Cognitive System Research,2015,第1作者
（21）Power Law Analysis of the Human Microbiome,Molecular Ecology,2015,第11作者
（22）A Survivability-Centered Research Agenda for Cloud Computing Supported Emergency Response and Management Systems.,IEEE-AIAA Aerospace,2014,第1作者
（23）The ISME Journal,2014,第11作者
（24）Spatial heterogeneity and co-occurrence patterns of human mucosal associated intestinal microbiota,The ISME Journal,2013,第11作者
（25）Stochastic populations, power law and fitness aggregation in Genetic Algorithms. Fundamenta Informaticae,Fundamenta Informaticae,2013,第1作者
（26）Chaotic populations in Genetic Algorithms.,Applied Soft Computing,2012,第1作者
（27）A unified definition for reliability, survivability and resilience inspired by the handicap principle and ecological stability,International Journal of Critical Infrastructures,,2012,第1作者
（28）A Bird Eye View of Microbial Community Dynamics,Microbial Ecological Theory ,2012,第1作者
（29）Exploiting sparseness in de novo genome assembly,BMC Bioinformatics,2012,第2作者
（30）Temporal Dynamics of the Human Vaginal Microbiota,Science Translational Medicine,2012,第11作者
（31）宏基因组研究的生物信息学平台现状,动物学研究,2012,第11作者
（32）Insect Navigation and Communication in Flight and Migration: A Potential Model for Joining and Collision Avoidance in MAV (Micro-Aerial Vehicle) and Mobile Robots Fleet Control.,Proceedings of The 32nd IEEE-AIAA AeroSpace Conference,2011,第1作者
（33）SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph ,CoRR abs/1106.2603,2011,第2作者
（34）Dynamic hybrid fault modeling and extended evolutionary game theory for reliability, survivability and fault tolerance analyses. ,IEEE Transactions on Reliability. ,2011,第1作者
（35）Did we miss some evidence of chaos in laboratory insect populations,Population Ecology,2011,第1作者
（36）Ecological ‘theatre’ for evolutionary computing ‘play’: some insights from population and evolutionary ecology.,I.J. Bio-Inspired Computing,2011,第1作者
（37）Frailty modeling for risk analysis in network security and survivability,I. J. of Information and Computer Security,2011,第1作者
（38）Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. ,Infectious Diseases of Obstetrics and Gynecology.,2010,第11作者
（39）Survival Analysis Approach to Life Table Analysis and Hypothesis Testing for Russian Wheat Aphid Populations.,Bulletin of Entomological Research,2010,第1作者
（40）Insect Sensory Systems Inspired Computing and Communications.,Ad Hoc Networks,2009,第1作者
（41）Towards a Population Dynamics Theory for Evolutionary Computing: Learning from Biological Population Dynamics in Nature.,Springer Lecture Notes in Artificial Intelligence,2009,第1作者

发表著作（ 1 ） Book Chapter: Measuring Microbiome Diversity with Hill Numbers.,Metagenomics: Perspecitives, Methods, and Applications.,Elsevier,2017-07,第5作者
（ 2 ） 《生物信息学：计算技术和软件导论》,Bioinformatics: Computing and Software,科学出版社,2017-09,第1作者


科研活动
科研项目（ 1 ） ****, 主持,部委级,2011-01--2013-12
（ 2 ） 遗传资源国家重点试验室启动基金, 主持,研究所（学校）,2011-07--2012-07
（ 3 ） 云南省引进高端科技人才项目, 主持,省级,2012-10--2014-11
（ 4 ） 网络系统可存活性理论的扩展及实证研究, 主持,国家级,2014-01--2018-12
（ 5 ） 云岭产业技术领军人才项目, 主持,省级,2015-10--2020-12

参与会议

合作情况
项目协作单位

指导学生