基本信息
刘仁义男博导中国科学院分子植物科学卓越创新中心
电子邮件： ryliu@sibs.ac.cn
通信地址： 上海市松江区辰花路3888号三号门科研中心
邮政编码：
部门/实验室：逆境中心
研究领域

招生信息
招生专业
招生方向生物信息学


教育背景2001-09--2005-06美国乔治亚大学博士研究生
1997-09--2001-06美国乔治亚大学硕士研究生
1994-09--1997-06中国科学院研究生院硕士研究生
1987-09--1991-06武汉大学本科

学历
学位

工作经历
工作简历2012-07~现在,中国科学院上海生命科学研究院植物逆境生物学研究中心,研究员
2007-09~2014-06,美国加利福尼亚大学河滨分校,助理教授
2006-01~2007-08,美国亚利桑那大学,博士后
2001-09~2005-06,美国乔治亚大学,博士研究生
1997-09~2001-06,美国乔治亚大学,硕士研究生
1994-09~1997-06,中国科学院研究生院,硕士研究生
1987-09~1991-06,武汉大学,本科

社会兼职

教授课程

专利与奖励
奖励信息
专利成果

出版信息
发表论文（1）Phloem transcriptome signatures underpin the physiological differentiation of the pedicel, stalk and fruit of cucumber (Cucumis sativus L.),Plant and Cell Physiology,2016,第11作者
（2）Coupling of histone methylation and RNA processing by the nuclear mRNA cap-binding complex,Nature Plants,2016,第4作者
（3）Integration of Hormonal and Nutritional Cues Orchestrates Progressive Corolla Opening,Plant Physiology,2016,第11作者
（4）Genome-Wide Identification and Characterization of microRNAs in Developing Grains of Zea mays L.,Plos ONE,2016,第4作者
（5）ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data,BMC Bioinformatics,2015,第11作者
（6）Comparative physiological, metabolomic, and transcriptomic analyses reveal mechanisms of improved abiotic stress resistance in bermudagrass [Cynodon dactylon (L). Pers.] by exogenous melatonin,Journal of Experimental Botany,2015,第11作者
（7）Asymmetric transcriptomic signatures between the cob and florets in the maize ear under optimal- and low-nitrogen conditions at silking, and functional characterization of amino acid transporters ZmAAP4 and ZmVAAT3,Journal of Experimental Botany,2015,第11作者
（8）Transcriptomic analysis reveals the roles of microtubule-related genes and transcription factors in fruit length regulation in cucumber (Cucumis sativus L.),Scientific Reports,2015,第4作者
（9）Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection,Scientific Reports,2015,第4作者
（10）Non-coding RNAs as potent tools for crop improvement,National Science Review,2014,第1作者
（11）Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.),Journal of Experimental Botany,2014,第11作者
（12）Roles of small RNAs in soybean defense against Phytophthora sojae infection,The Plant Journal,2014,第4作者
（13）Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis,Molecular Cell,2014,第4作者
（14）Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns,PNAS,2014,第4作者
（15）A glimpse of Escherichia coli O157:H7 survival in soils from eastern China,Science of the Total Environment,2014,第4作者
（16）Phylogenetic analysis reveals dynamic evolution of the poly(A)-binding protein gene family in plants,BMC Evolutionary Biology,2014,第2作者
（17）Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis,The Plant Journal,2014,第4作者
（18）STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis,Nucleic Acids Research,2013,第1作者
（19）Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues,Molecular Plant,2013,第11作者
（20）Abiotic stress-associated microRNAs in plants: discovery, expression analysis, and evolution,Front Biology,2013,第11作者
（21）Transcriptome analysis of medicinal plant Salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis,PLoS One,2013,第4作者
（22）Transcription repressor HANABA TARANU controls flower development by integrating the actions of multiple hormones, floral organ specification genes, and GATA3 family genes in Arabidopsis,The Plant Cell,2013,第4作者
（23）The unique evolution of the programmed cell death 4 protein in plants,BMC Evolutionary Biology,2013,第2作者
（24）The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis,The EMBO Journal,2013,第4作者
（25）The expression analysis of silk gland-enriched intermediate-size non-coding RNAs in silkworm Bombyxmori,Insect Science,2013,第4作者
（26）Maize LAZY1 mediates shoot gravitropism and inflorescence development through regulating auxin transport, auxin signaling, and light response,Plant Physiology,2013,第4作者
（27）DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV,PNAS,2013,第4作者
（28）A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis,PLoS Genetics,2013,第4作者
（29）A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis,The Plant Cell,2013,第4作者

发表著作

科研活动
科研项目（ 1 ） Deciphering regulatory networks of Legume seed storage metabolism, 参与,国家级,2015-01--2018-12
（ 2 ） 中科院****, 主持,部委级,2015-01--2017-12

参与会议（1）ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data第三届全国计算生物学与生物信息学学术会议2016-04-15


合作情况
项目协作单位

指导学生