1、招生信息2、教育背景3、工作经历4、教授课程5、专利与奖励6、出版信息7、科研活动8、合作情况9、指导学生
基本信息
王勇 男南海海洋研究所
电子邮件：wangy@sidsse.ac.cn
通信地址：
邮政编码：


研究领域海洋生态学
环境微生物学
基因组学
生物信息学

在研项目
海斗深渊科学与攻关先导专项B， 生命科学项目负责人
国家自然基金面上和地区项目，负责人
国家自然基因广东省重点项目，主要参与人
973项目西南印度洋洋中脊微生物成矿作用， 主要参与人
红海宏基因组和生物活性物质， 主要参与人
招生信息需要硕士研究生2名；博士研究生1名

招生专业



招生方向


教育背景

学历1993-1997年 兰州大学，生物系，生物化学专业
1997-2000年 浙江大学，海洋生物技术专业
2001-2004年 香港大学，生物信息与分子进化专业


学位
工作经历2004-2008年 博士后， 香港大学
2008年 高级研究助理， 香港大学玛丽医院
2009年-2012年 博士后，阿卜杜拉国王大学，沙特阿拉伯
2010年-2013年 访问学者兼博士后，香港科技大学
2013年至今 中国科学院三亚深海科学与工程研究所


工作简历

社会兼职
教授课程
专利与奖励

奖励信息

专利成果
出版信息1. Wang Y, Liu BQ, Luo QJ, Fei ZQ, Pei LQ, and Xue QZ. 2000. RAPD analysis of genetic variation among Porphyra haitanensis strains. Periodical of Ocean University of China. 30: 225-229. (In Chinese)
2. Luo BQ, Pei LQ, Pan SY, Wang Y, and Fei ZQ. 2002. Utilization of inorganic carbon in free-living conchocelis of Porphyra haitanensis. Journal of Fisheries of China 26: 477-480. (In Chinese)
3. Wang Y, Pei LQ, Luo Q J, Liu BQ, Fei ZQ, and Xue QZ. 2002. DNA extraction from Porphyra conchocelis. ACTA Oceanologica Sinica 24:146-148. (In Chinese)
4. Xia X, Xie Z, Salemi M, Chen L and Wang Y. 2003. An index of substitution saturation and its application. Molecular phylogenetics and evolution 26: 1-7.
5. Zeng FY, Chan CW, Chan MN, Chen JD, Chow KY, Hon CC, Hui KH, Li J, Li VY, Wang CY, Wang PY, Guan Y, Zheng B, Poon LL, Chan KH, Yuen KY, Peiris JS and Leung FC. 2003. The complete genome sequence of severe acute respiratory syndrome coronavirus strain HKU-39849 (HK-39). Exp Biol Med (Maywood) 228:866-873.
6. Wang Y and Leung FCC. 2004. An evaluation of new criteria for CpG islands in the human genome as gene markers. Bioinformatics 20:1170-1177.
7. Wang Y, Rocha EPC, Leung FCC, and Danchin A. 2004. Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes. Journal of Molecular Evolution 58:692-711.
8. Wang Y, and Leung FCC. 2004. DNA structure constraint is probably a fundamental factor inducing CpG deficiency in bacteria. Bioinformatics 22:3336-3345.
9. Wang Y, and Leung FCC. 2006. Long inverted repeats in eukaryotic genomes: Recombinogenic motifs determine genomic plasticity. FEBS Letters 580: 1277-1284.
10. Wang Y, Wang ZG, Li J, Wang YJ and Leung FCC. 2007. Database for chicken full-length cDNAs. Physiological Genomics 28: 141-145.
11. Wang Y, Fong PY, Leung FCC, Mak W, and Sham PC. 2007 Increased gene coverage and Alu frequency in large linkage disequilibrium blocks of the human genome. Genetics and Molecular Research 6: 1131-1141.
12. Wang Y, Zeng F, Hon CC, Zhang YZ, and Leung FCC. 2008. The mitochondrial genome of Pleurotus ostreatus (oyster mushroom). FEMS Microbiology Letters 280: 34-41.
13. Wang Y and Leung FCC. 2008. GC content increased at CpG flanking positions of fish genes compared with sea squirt orthologs as a mechanism for reducing impact of DNA methylation. PLoS ONE 3: e3612
14. Wang Y, and Leung FCC. 2008. Loss of CpG sites in GC-poor regions of vertebrate genomes: An indication of context-dependent mutagenicity of methylated CpG sites. Genomics, Proteomics & Bioinformatics 3-4: 144-154
15. Wang Y, and Leung FCC. 2009. A study on genomic distribution and sequence features of human long inverted repeats reveals species-specific intronic stem-loops. FEBS Journal 276: 1986-1998
16. Wang, Y. and F. C. C. Leung. 2009. Acquisition of inverted GSTM exons by an intron of primate GSTM5 gene. Journal of Human Genetics 54: 271-276
17. Wang, Y. and Leung FCC. 2009. In silico prediction of two classes of honeybee genes with CpG deficiency or CpG enrichment and sorting according to gene ontology classes. Journal of Molecular Evolution 68: 700-705
18. Wang Y, and Leung FCC. 2009. Comparative genomic study on context-dependence of CpG mutations: Acceleration effect of 5’ T nucleotides and new evidence of strand asymmetry in genes. Online Journal of Bioinformatics 10: 165-179
19. Wang Y, and Leung FCC. 2009. Discovery of a long inverted repeat in human POTE genes. Genomics 94: 278-283
20. Wang Y, and Qian PY. 2009. Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS ONE 4: e7401.
21. Zhang HM, Zhao CQ, Li X, Zhu Y, Gan CS, Wang Y, Ravasi T, Qian PY, Wong SC, Sze SK, 2010. Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach. Proteomics 10: 2780-2789
22. Qian PY, Wang Y, Lee OO, Yang JK, Lau SCK, Abdulaziz S and Wong T. 2011. Vertical stratification of microbial communities in the Red Sea. ISME J. 5: 507-518.
23. Lee OO, Wang Y, Yang JK, Al-Suwailem A, Qian PY*. 2011. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. ISME J. 5: 650-664.
24. Wang Y, Yang JK, Lee OO, Dash S, Lau SCK, Al-Suwailem A, Wong TYH, Qian PY*. 2011. Hydrothermally generated aromatic compounds are consumed by bacteria colonizing in Atlantis II Deep of the Red Sea. ISME J. 5: 1652-1659.
25. Wang Y, Yang JK, Lee OO, Lau SCK, Wong TYH, Al-Suwailem A, Danchin A, Qian PY*. 2011 Bacterial niche-specific genome expansion is coupled with highly frequent gene disruptions in deep-sea sediments. PLoS ONE e29149.
26. Lee OO, Yang JK, Bougouffa S, Wang Y, Batang Z, Tian RM, Al-Suwailem A, and Qian PY*，2012. Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing. Appl. Environ. Microbiol. 78: 7173-7184.
27. Arellano SM, Lee OO, Lafi FF, Yang JK, Wang Y, Young CM, Qian PY*, 2013. Deep sequencing of Myxilla (Ectyomyxilla) methanophila, an epibiotic sponge on cold-seep tubeworms, reveals methylotrophic, thiotrophic, and putative hydrocarbon-degrading microbial associations. Microb Eco. 64: 450-461.
28. Wang Y, Cao HL, Zhang GS, Bougouffa S, Lee OO, Al-Suwailem A, Qian PY*, 2013. Autotrophic microbe metagenomes and metabolic pathways differentiate adjacent red sea brine pools. Sci. Rep. 3: 17481
29. Wang Y, Lee OO, Yang JK, Li T G, Qian PY*. 2013. Artifactual pyrosequencing reads in multiple-displacement-amplified sediment metagenomes from the Red Sea. PeerJ 1: e69
30. Bougouffa S, Yang JK, Lee OO, Wang Y , Batang Z, Al-Suwailem A, Qian PY*. 2013. Distinctive microbial community structure in highly stratified deep-sea brine water columns. Appl. Env. Microbiol. 79: 3425-3437
31. Wang Y, Zhang WP, Lee OO, Tian RM, Cao HL,Gao ZM, Li YX, Yu L, Xu Y, Qian PY*. 2013. Adaptation of intertidal biofilm communities is driven by metal ion and oxidative stresses. Sci Rep. 3: 3180 (co-first author)
32. Lee OO, Chung HC, Yang J, Wang Y, Wang H, Qian PY*. 2014. Molecular techniques revealed highly diverse microbial communities in natural marine biofilms on polystyrene dishes for invertebrate larval settlement. Microb Eco. 68: 81-93.
33. Wang Y, Lee OO,Tian RM, Zhang WP, Shek CS,Bougouffa S, Al-Suwailem A, Batang ZB, Xu W, Wang GC, Zhang XX,Lafi FF, Bajic VB, Qian PY*, 2014. In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system. Sci Rep. 4: 3587 (co-first author)
34. Wang Y, Zhang WP, Cao HL, Shek CS, Tian RM, Wong YH, Batang Z, Al-Suwailem A, Qian PY*. 2014. Diversity and distribution of eukaryotic microbes in and around a brine pool adjacent to the Thuwal cold seeps in the Red Sea. Front Microbiol. 5:37
35. Cao HL, Wang Y, Lee OO, Zeng X, Shao ZZ, Qian PY*. 2014. Microbial Sulfur Cycle in Two Hydrothermal Chimneys on the Southwest Indian Ridge. mBio 5(1):e00980-13.
36. Wang Y, Tian RM, Gao ZM, Bougouffa S, He LS, and Qian PY*. 2014. Optimal eukaryotic 18S and universal 16S/18S ribosomal RNA primers and their application in a study of symbiosis. PLoS ONE 9: e90053.
37. Gao ZM, Wang Y, Tian RM, Wong YH, Batang ZB, Al-Suwailem AM, Bajice VB, Qian PY*. 2014. Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont candidatus Synechococcus spongiarum. mBio. 5(2): e00079.
38. Wang Y, Tian RM, Bougouffa S, Gao ZM, Cai L, Bajic V, Qian PY*. 2014. Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge. Environ. Microbiol. 16: 3548-3561. (co-first author).
39. Zhang P, Wang Y, Tian RM, Bougouffa S, Yang B, Cao HL, Zhang G, Wong YH, Xu W, Batang Z, Alsuwailem A, Zhang XX, Qian PY*. 2014. Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system. Sci. Rep. 4:6647.
40. Zhang WP, Bougouffa S, Wang Y, Lee OO, Yang JK, Chan C, Song XY, Qian PY*. 2014. Toward Understanding the Dynamics of Microbial Communities in an Estuarine System. PLOS ONE. 9: e94449.
41. Tian RM, Wang Y, Bougouffa S, Gao ZM, Cai L, Zhang WP, Bajic V, Qian PY*. 2014. Effect of Copper Treatment on the Composition and Function of the Bacterial Community in the Sponge Haliclona cymaeformis. mBio. 5: e01980.
42. Gao ZM, Wang Y, Lee OO, Tian RM, Wong YH, Bougouffa S, Batang Z, Al-Suwailem A, Lafi FF, Bajic VB, Qian PY*. 2014. Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues. Microb. Eco, 68: 621-32.
43. Tian RM, Lee OO, Wang Y, Cai L, Bougouffa S, Chiu JMY, Wu RSS , Qian PY*, 2015. Effect of polybrominateddiphenylether (PBDE) treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis. 5: 799.
44. Wang Y, Gao ZM, Xu Y, Li GY, He LS, Qian PY*. 2015. An evaluation of multiple annealing and looping based genome amplification using a synthetic bacterial community. ACTA Oceanol Sin, In press.


专著章节:
Wang, Y and Pei-Yuan Qian. 2014. Conserved regions in 16S ribosome RNA sequences and primer design for studies of environmental microbes. Encyclopedia of Metagenomics.

Wang, Y and Pei-Yuan Qian. 2014. Phylogenetic relationships among Acidobacteria subdivisions reconstructed using conservative sites in 16S rRNA genes. Encyclopedia

发表论文

发表著作
科研活动受邀大会报告:
Pei LQ, Wang Y and Xue QZ. 2000 RAPD analysis of genetic variation in seaweed Porphyra haitanensis. Proceedings of the International Symposium on Marine Biotechnology. 6-8 December, Qingdao, China, 95.

Lee OO, Yang J, Wang Y, Batang Z, Al-Suwailem A, Qian PY. 2011, Pyrosequencing reveals spatial and species variations in bacterial communities associated with corals from the Red Sea. The 4th Congress of European Microbiologists, Geneva, Switzerland

Wang Y, Gao ZM, Xu Y, He LS, Qian PY. 2014. An Evaluation of Multiple Annealing and Looping Based Amplification (MALBAC) Using a Synthetic Bacterial Community. The 10th Asian Pacific Conference of Marine Biotechnology. Taipei, May 4-8

会议摘要:
Wang Y. and Leung F.C. 2003 An evaluation of new criteria for CpG islands in the genome as gene markers. The 11th International Conference on Intelligent Systems for Molecular Biology. 29 June – 3 July, Brisbane, Australia

Wang Y. Wang Z.G. and Leung F. C. 2006 A database for chicken full-length cDNAs.Annual Meeting of Poultry Science Association, 2006, Edmonton, Canada

Wang Y., Yang J. K., O. O. Lee, S. C. K. Lau, T. Wong, Pei-Yuan Qian 2010 Brine-filled Atlantis II Deep in the Red Sea: A new hydrothermal ecosystem induces genetic isolation among bacterial inhabitants under compositional shifts. Annual Meeting of American Society of Microbiology, San Diego, US

Wang Y., Yang J. K., Lee O.O., Al-Suwailem A., Danchin A., Qian P.-Y. 2011, Bacterial lineage-specific genome expansion is coupled with highly frequent gene disruptions in the sediments in a deep-sea brine pool. The 4th Congress of European Microbiologists, 2011, Geneva, Switzerland

Lee O.O., H.C. Chung, J. Yang, Y. Wang, S. Dash, P.-Y. Qian. 2011. Microbial community and chemical profiles of natural biofilms dictate larval settlement preference of the barnacle Balanus amphitrite. The 4th Congress of European Microbiologists, Geneva, Switzerland

科研项目

参与会议
合作情况

项目协作单位
指导学生